Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01116 ATGATGACGATGCAGTTGGTGTCTTCCGGAGTTGTGTTCTTGTTTGTGACGGTTTTCTTGACGTGGGTTCATGTGGTTATAGCAGAAGGTGAAAATGGTTATGGTGGTATTAGGAACTACATCAGTTGGGAAGATTTGCAGGTGGATGAGCAAAGGTTAACCTTAAAGCGCCATGATGATGTTAGAATTATTATTGTTAACAAATATGGTTGGGGGCACTCCAAAACTGTTCAAGGTGCCGTGGATATGGTTCCTGTTAATAACAAACATAGGGTGAAAATTTACATTTATCCAGGAGTTTACAGAGAGAAAGTGCGTGTGCCTGTGAGCAAGCCTTATGTATCATTCATAGGGAAAAGAAACCAAACAGCAACTCCTGTTATTACTTGGAACAGTAAGTCATCTGATAAAGGCACAAATGGCCAAGCATTGGGCACCTTTGATACAGCGACAGTTGGAGTGGACTCAGATTATTTCTGTGCAAGTGGGGTCACTTTTGAGAACTCAGTGATTGCAACGGCTGGTGTGAAAGGGATGCAAGGAGTGGCACTGAGGGTGAACAGTGCAAGAGCCATGTTCTATCAAGTGAAGATTAAGGGAGCACAGGACAGTCTCTTGGACAACACAGGAAGCCATTACTTCTTAAAGTGCCACATCCTAGGAAAAGTTGATTTTATCTTTGGCAATGCAAAATCACTGTATGAGAATTGCCTTCTTCAGTCAATAGCAGACAACTTTGGAGCGATAGCAGCACATCATAGGAATTCAGCAACTGAAGACACAGGTTTTTCTTTTGTGGGGTGCAGTATCAGAGGAAGTGGCAGAGTATACCTTGGCAGAGCATGGGGGAACTACTCTAGAATTATATACTCCAAATGTAATATGGATGACATTATTATTCCTGAAGGGTGGTCAGATTGGAATCACTCAGATAGAAAGAAGACTGCAGTGTTTGGGGAGTATGAATGCAATGGAAAAGGAGCAGATAGAAGCAACAGGGCAGCTTGGTCAAAATCATTCAGCTATGATGAAGCAGTGCCTTTCCTGCAGAAGAGTTTCATACATGGAGACCAGTGGCTCAGACTATAG 1089 0.427 MMTMQLVSSGVVFLFVTVFLTWVHVVIAEGENGYGGIRNYISWEDLQVDEQRLTLKRHDDVRIIIVNKYGWGHSKTVQGAVDMVPVNNKHRVKIYIYPGVYREKVRVPVSKPYVSFIGKRNQTATPVITWNSKSSDKGTNGQALGTFDTATVGVDSDYFCASGVTFENSVIATAGVKGMQGVALRVNSARAMFYQVKIKGAQDSLLDNTGSHYFLKCHILGKVDFIFGNAKSLYENCLLQSIADNFGAIAAHHRNSATEDTGFSFVGCSIRGSGRVYLGRAWGNYSRIIYSKCNMDDIIIPEGWSDWNHSDRKKTAVFGEYECNGKGADRSNRAAWSKSFSYDEAVPFLQKSFIHGDQWLRL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01116 362 Gene3D - 61 362 IPR012334 -
Vian7g01116 362 FunFam Pectinesterase 59 362 - -
Vian7g01116 362 SUPERFAMILY Pectin lyase-like 63 360 IPR011050 -
Vian7g01116 362 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 54 361 - -
Vian7g01116 362 Pfam Pectinesterase 64 357 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01116 Vian-Chr7 19309585 19311355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01116 37 314 Carbohydrate Esterase AT5G55590 54.698 8.52e-119 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01116 K01051 - gmx:100813382 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01116 7 19309585 19311355 Vian7g01116 7 19309585 19311355 ECH