Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01113 ATGACCAACAATAATGTAAAGGAGCCCTTGCTGTCAGGATCACTGAATGAGACTCAAAAAGCTAAACGGCTTTTAAACAAGAGAAGGTTACACCGCTCTAGAAGTGCTCCTAACACCGATCTTGTTCCTTCTGAGACACAATGCAAAGAAACAACTCATCCAAAAACATCCATATTTCAGAATTTACATCCAAATTATAAAAGAGTGGCTATCTACCTTGCAGTATATTTAGGTGTAGGTGCTTTAATCTTCTTTCTTGTCAGGGACCAGATCAAGGGGACGAAAACAGATGGAATTCTTGATGCTTTGTACTTTACAATTGTTACAATGACCACTGTTGGATATGGAGATCTTGTGCCAGATAGCCACCTAACAAAACTACTTGCATGTGCCTTTGTTTTCTCTGGGATGGCATTGATCGGATTGACTGTAAGCAAAGCAGCAGATTACTTAGTTGAGAAACAGGAACTTTTGCTAGTTAAAGCTATGCACGTGCACCAAAAAGTTGATTCAACTGGAATATTAAGGGAGCTTGAGACCAATAAAACAAGATACAAACTTTTTGTAGTCTTTTTCCTCCTTTTGGTTCTCTTCACTGCAGGGACAATTTTTCTGGTCACTGTTGAGAAATTGGATGTTATCGATGCATTCTACTGTGTTTGTTCTACCATTACAACCCTTGGTTATGGGGACAAAAGCTTCTCAACTCAAGCAGGAAGAATATTTGCCGTGTTTTGGATATTGACAGGTACTATTACTTTGGCTCAGTTTTTCCTCTACATTGCTGAGCTAAACACCGAAATCAGACAAAAGGAGCTTGTGAAGTGGGTGCTTACAAGGAAAGTGACCAATTTAGATTTGGAGGCTGCTGATCTTGATGAGGATGGAACTGTTGGGGCTGCTGAATTTGTTATTTATAAACTGAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGCAGGAGTTTGAACAGCTAGATGTTGATGATTCTGGTACATTGTCACCTTCGGATATAACACTTGCTCACTCAACTTAG 1047 0.3935 MTNNNVKEPLLSGSLNETQKAKRLLNKRRLHRSRSAPNTDLVPSETQCKETTHPKTSIFQNLHPNYKRVAIYLAVYLGVGALIFFLVRDQIKGTKTDGILDALYFTIVTMTTVGYGDLVPDSHLTKLLACAFVFSGMALIGLTVSKAADYLVEKQELLLVKAMHVHQKVDSTGILRELETNKTRYKLFVVFFLLLVLFTAGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTITLAQFFLYIAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSPSDITLAHST 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01113 348 FunFam Two-pore potassium channel 1 167 275 - -
Vian7g01113 348 SUPERFAMILY Voltage-gated potassium channels 179 284 - -
Vian7g01113 348 Gene3D - 63 157 - -
Vian7g01113 348 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Vian7g01113 348 ProSitePatterns EF-hand calcium-binding domain. 291 303 IPR018247 -
Vian7g01113 348 FunFam Calcium-activated outward-rectifying potassium channel 1 63 158 - -
Vian7g01113 348 SUPERFAMILY EF-hand 250 345 IPR011992 -
Vian7g01113 348 Gene3D - 167 278 - -
Vian7g01113 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 71 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian7g01113 348 PRINTS Two pore domain K+ channel signature 296 305 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian7g01113 348 PRINTS Two pore domain K+ channel signature 222 250 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian7g01113 348 Pfam Ion channel 72 152 IPR013099 -
Vian7g01113 348 Pfam Ion channel 193 265 IPR013099 -
Vian7g01113 348 SUPERFAMILY Voltage-gated potassium channels 69 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01113 Vian-Chr7 19291277 19292518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01113 53 348 Ion Channels AT5G55630 68.350 5.57e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01113 K05389 - gmx:100777388 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01113 7 19291277 19292518 Vian7g01113 7 19291277 19292518 ECH