Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01103 ATGGGCACGTGCATGTGCATGGTTGTCTTCTTCGTCTTCATGCTCTTCTTGGGCGCTCTATGCGAGGTGGCAGCCGCACAAAACAACGTCGGCTTCGACTTCCCTTCTTTCACCCTCGACAACAACAACATCACCCTCCTCGGCGATTCCTTTTTATGGAGCAACGGCGTCGTAAGACTCACAAACGTCGCATCCACTTCCAGCACCGGCGCCGTCATCTACGCCTACCCCATCCCACTCTTCCACCCTCCAACCGCCACCTTCGCCTCCTTCTCCACCACCTTCACCTTCTCCATCAACAACCTAAACCCCGCCTCCTCCGGCGACGGCCTTGCCTTTTTCCTCTCCCCGAACACCACCTCCACCAATCTCTCCCTCTCCGCTCCACTCGGCCTCCCCTCCTCCTTCGTCGCCGTCGAGTTCGACACGCACTTGGACCCCCGCTTCGGCGACCCTAACGAGAACCATGTCGGCTTCGACGTCGACTCCATGAAGTCCCTCAAAACCGGTGACCCCATCTTGCACGGCATCGACCTCAAGAGCGGCAACACCATCATCGCATGGATCGACTACGACGCCGGTCGAACTTCTCTCGCCGTTTTCTTGAGCTATTCACTTCCAAAACCCGTGGACCCCGTCCTCTCCGTCAAGTTCAATCTTTCTCAACACTTGAGAAACCCCGTCTACATTGGATTCTCCGCTTCCACTCAAGGAATTACCGAGATTCACCAAATCCAGAGTTGGACCTTTCACAGTGCTTGTGCTCCCGCAAGAACGAGGTTGCACCCTCACAACGTTTCCGTGATGGGAACTGTACCTATTTCTGGTTCGGGTTCAGGTTCTGGTTCTGGTGGTTCTACTTCTGTTTCTAGTCCAAGCACTAATTCTACTTCCAAGAAGCATGGCAAGAGGGTTGGCGTTGGTGTGGTTGTTGCGGGATCGGTCTCTTTCTTTGTGGTTTTTTCAGTCTTGGGGTATGTTTTTGTTCGGAGATCGAGGGGTGGGAGAGAAGAAAAGTTTGAGAATGGTTTCGTGGCATGTCCTAGGGCGTTCGATTACAAAGAGTTGAAGTCTGCGACAAGAGAGTTTCATCCGAGTAGGATTGTTGGGCACGGATCATTTGGGACGGTGTATAAGGCGTTCTTTATCTCTTCCGGAACCATTGCTGCAGTGAAAAGGTCGCGGCACTCTCACGAAGGGAAGACAGAGTTTCAGGCTGAACTGTCCATCATAGCCGGTTTGCGGCACAAGAATTTGGTTCAGCTGCAAGGTTGGTGTGTTGAGAAGGGAGAGTTACTGCTGGTGTATGAGTTTATGCCCAATGGAAGTTTAGACAAGATGCTTTACAAGGAACCTGAAGTGGGGAGGTTGCTGAGTTGGTCTCACAGGGTGAACATTGCTGTTGGGTTGGCCTCTGTGCTGGTTTACCTACACCAAGAGTGTGAGAGGAGAGTGGTTCACAGGGACATTAAGACTGGGAACATATTGCTGGATGGAAACATGAATCCTAGTTGTGCTAACCCTGATACTGCTGGGAGGCCTTCCATGAGAAGGGTGCTCCAGATTCTGAACCATGAGGCTCCACCACTTACTGTGCCAAAAGTTAAGCCAACACTCACCTTCTCCTCTGCACTTCCCCTCACTATTGAGGACATTGTTTCTGACACTGAAGAAGTTTTCAGTACCAGCAGGGCACAACAGAGGAAGCTTGTTTTTGTTTTAGTCATGGCTCAAACTAGTTACAATAACAAAATTCTTGATGAGGACCTTGTTCATAAAATGGGCCTTGGGCATTCTAAGATTTTACTTCCTGCACCTCACCATGACTAA 1830 0.5098 MGTCMCMVVFFVFMLFLGALCEVAAAQNNVGFDFPSFTLDNNNITLLGDSFLWSNGVVRLTNVASTSSTGAVIYAYPIPLFHPPTATFASFSTTFTFSINNLNPASSGDGLAFFLSPNTTSTNLSLSAPLGLPSSFVAVEFDTHLDPRFGDPNENHVGFDVDSMKSLKTGDPILHGIDLKSGNTIIAWIDYDAGRTSLAVFLSYSLPKPVDPVLSVKFNLSQHLRNPVYIGFSASTQGITEIHQIQSWTFHSACAPARTRLHPHNVSVMGTVPISGSGSGSGSGGSTSVSSPSTNSTSKKHGKRVGVGVVVAGSVSFFVVFSVLGYVFVRRSRGGREEKFENGFVACPRAFDYKELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFQAELSIIAGLRHKNLVQLQGWCVEKGELLLVYEFMPNGSLDKMLYKEPEVGRLLSWSHRVNIAVGLASVLVYLHQECERRVVHRDIKTGNILLDGNMNPSCANPDTAGRPSMRRVLQILNHEAPPLTVPKVKPTLTFSSALPLTIEDIVSDTEEVFSTSRAQQRKLVFVLVMAQTSYNNKILDEDLVHKMGLGHSKILLPAPHHD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01103 609 Gene3D Phosphorylase Kinase; domain 1 329 438 - -
Vian7g01103 609 ProSiteProfiles Protein kinase domain profile. 363 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01103 609 MobiDBLite consensus disorder prediction 272 302 - -
Vian7g01103 609 PANTHER - 43 502 - -
Vian7g01103 609 Pfam Protein kinase domain 364 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01103 609 CDD lectin_legume_LecRK_Arcelin_ConA 32 252 IPR001220 GO:0030246
Vian7g01103 609 SUPERFAMILY Protein kinase-like (PK-like) 344 503 IPR011009 -
Vian7g01103 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Vian7g01103 609 ProSitePatterns Legume lectins beta-chain signature. 137 143 IPR019825 -
Vian7g01103 609 ProSitePatterns Protein kinases ATP-binding region signature. 369 392 IPR017441 GO:0005524
Vian7g01103 609 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 253 IPR013320 -
Vian7g01103 609 MobiDBLite consensus disorder prediction 272 301 - -
Vian7g01103 609 SMART serkin_6 363 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01103 609 Gene3D - 27 254 - -
Vian7g01103 609 Gene3D Transferase(Phosphotransferase) domain 1 439 504 - -
Vian7g01103 609 Pfam Legume lectin domain 31 258 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01103 Vian-Chr7 19255233 19257599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01103 450 558 Receptor kinase-like Gene Family AT5G55830 43.363 2.75e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian7g01103 Lectin_legB 1e-59 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01103 - - gmx:102668712 609.757