Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01085 ATGTCTTTAAGCTTGAGGAATCTCTCATCTTCATACAAAATCTTCTCCCTCTCTTTGCTTCTTTTATTTCATTGTTGTTACTCCCAGCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAAAACAGTTTAAACAGTTCTGCAGATGCATTAGTATCTTGGAATCCTTCCAGCACAAGCCCATGCAATTGGTTTGGGGTGCGCTGCAACTTAGAAGGAGAGGTGGTTGAGATAAACCTGAGTTCAGTGAACTTGCAAGGCTCGTTACCTTCAAATTTTCAACTTTTCAGGAATTTGAAGATTCTTGCCCTCTCAGCAGCCAACATCACAGGCAGGATTCCAAAGGAGATTGGAGACTGTAAAGAGCTCACTTTCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTAGCTCTGCATACCAACTTTCTTGAAGGCAACATTCCATCCAGCATAGGAAATTTATCGAGTCTGGTGAACTTGACACTCTATGACAACAAACTGAGTGGTGAAATTCCAAAGAGTATTAGCTCATTAACTGAGCTCCAAGTGTTGAGAGTAGGAGGGAACACAAACCTTAAGGGTGAGGTGCCATGGGATATTGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAATCTTCCTTCTTCAATAGGGATGCTGAAAAGAGTTCAGACCATAGCCATTTACACAACTCTGCTATCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGTGAGTTACAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTAAGAATCTTCTCTTGTGGCAAAACAATATAGTTGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTGGAAGTCATAGACATGTCAGAAAATCTTCTCACAGGGAGCATACCAACCAGTTTTGGTAAGCTATCAAATCTGCAAGGGCTTCAACTGAGTGTTAACAAGATTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAACTGGAAGTTGACAATAATGCTATCTCTGGAGAGATTCCTCCTGTTATCGGAAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTGACAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGATCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGACTGAGGAACCTCACTAAACTACTGCTTCTTTCCAACGATTTGTCTGGCTTTATACCACCTGAGATAGGTAATTGCACAAGCCTCTACAGGTTGAGGTTAAATCACAATAGACTGTCAGGTACAGTTCCATCTGAGATCACCAACTTGAAGAATTTGAACTTTTTGGACGTGAGCAGCAATCATCTTGTAGGGGAAATTCCTCCTACACTATCCAGATGCCAAAACCTTGAGTTTCTGGACCTTCACTCAAATAGTCTTATTGGCTCAGTTCCAAACAATCTGCCCAAAAACCTGCAGCTAATCGACCTCTCAGACAACAGACTAACAGGTGAACTGAGCCATTCCATTGGTTCATTAACCGAGTTAGCCAAACTCAACTTGGGAAAGAATCAACTCAGCGGAAGTATCCCTGCTGAGATCCTATCTTGCTCCCAGTTACAACTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAATTGCTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGCTGTAACCAGTTTTCTGGTGAAATTCCACCCCAGTTCTCCGGTCTTAGAAAACTTGGAGTGCTTGACCTCTCCCACAACAAGCTCTCAGGGAAGTTGGATACTCTCTCTGACCTTCAAAACCTTGTTTCTTTAAATGTTTCCTTCAATGACTTCACCGGAGAATTGCCTAACACCCCATTCTTCAGGAAGCTCCCTCTCAGTGATCTCACAGGAAATGATGGCCTCTACATTGTTGGTTCTGTAGACAGAAAGGAAGCCAAGGTTCATGCCAGGTTGTTTATGAAAATTATATTATCCATTCTCTTAAGCACCAGTGCAGTACTAATACTGCTCACAATCCATGTCTTGATTCGTGCTCATGTTTCTAACAAAGCATTCACGGGAAACAACAATTGGGTGTTAACTCTGTATCAGAAGTTTGAATTCTCAGTTGATGATATTGTCCGGAATTTGACTTCATCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTTAAAGTACCAAATGGCCAAACACTAGCAGTTAAAAAGATGTGGACATCGGCAGAGTCAGGAGCATTTACTTCTGAAATTCAAACACTGAGTTCAATTAGACATAAAAACATCATCAAGCTTCTGGGTTGGGGGTCCAGCAAGAACATGAAGCTGCTGTTTTATGAGTACCTCCCTAACGGAAGCTTGAGCTCATTACTTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAAATCAGATATGATGTTATGGTAGGAGTGGCTAATGCACTTGCATATTTGCACCATGATTGTGAGCCTTCCATATTGCATGGAGATGTCAAAGCCATGAACGTGTTGTTAGGTCCTGGCTATCAGCCTTACCTATCTGACTTTGGCCTAGCTAGAATTGCAAGTGAAAATGGTGATTGTACAAATTCCAAGCCATTTCAAAGACCCTACCTTGCTGGCTCCTATGGGTACATGGCTCCAGAACATGCATCTATGCAGCAGATCACTGAGAAGAGTGATGTGTACAGTTTTGGGGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCTCTTGACCCAACACTTCCTGGGGGTGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCCAGCAAAGGAGACCCATCTGACATTCTTGACCCAACACTCAGAGGGAGAACTGATTCCACAGAGCATGAAATGTTACAAACTCTAGCTGTCTCATTTCTATGTGTCAGCACCAGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTTAGGGAAATCCGATTTGTTGAGGCACCAACCGCAGCTTCTGATGCATCGAATGGAGTTTCAACAGTGCATGCTTCTCCATCACCTCTTAAAACTGTAGTTTCACATGGAACTTCTAAATGTTCCTTTGATTTTTCTGAGGACTCAATCTGTTGA 3261 0.4299 MSLSLRNLSSSYKIFSLSLLLLFHCCYSQLNEQGQALLAWKNSLNSSADALVSWNPSSTSPCNWFGVRCNLEGEVVEINLSSVNLQGSLPSNFQLFRNLKILALSAANITGRIPKEIGDCKELTFIDLSGNSLFGEIPEEICRLSKLQTLALHTNFLEGNIPSSIGNLSSLVNLTLYDNKLSGEIPKSISSLTELQVLRVGGNTNLKGEVPWDIGNCTNLVVLGLAETSISGNLPSSIGMLKRVQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLKNLLLWQNNIVGTIPEELGSCTQLEVIDMSENLLTGSIPTSFGKLSNLQGLQLSVNKISGIIPPEITNCTSLTQLEVDNNAISGEIPPVIGNLRSLTLFFAWQNKLTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLSGTVPSEITNLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNSLIGSVPNNLPKNLQLIDLSDNRLTGELSHSIGSLTELAKLNLGKNQLSGSIPAEILSCSQLQLLDLGSNSFSGEIPKEIAQIPSLEIFLNLSCNQFSGEIPPQFSGLRKLGVLDLSHNKLSGKLDTLSDLQNLVSLNVSFNDFTGELPNTPFFRKLPLSDLTGNDGLYIVGSVDRKEAKVHARLFMKIILSILLSTSAVLILLTIHVLIRAHVSNKAFTGNNNWVLTLYQKFEFSVDDIVRNLTSSNVIGTGSSGVVYKVKVPNGQTLAVKKMWTSAESGAFTSEIQTLSSIRHKNIIKLLGWGSSKNMKLLFYEYLPNGSLSSLLHGSGKGKAEWEIRYDVMVGVANALAYLHHDCEPSILHGDVKAMNVLLGPGYQPYLSDFGLARIASENGDCTNSKPFQRPYLAGSYGYMAPEHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGGAHLVQWVRNHLASKGDPSDILDPTLRGRTDSTEHEMLQTLAVSFLCVSTRAEDRPTMKDTVAMLREIRFVEAPTAASDASNGVSTVHASPSPLKTVVSHGTSKCSFDFSEDSIC 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01085 1086 Pfam Protein kinase domain 763 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01085 1086 Gene3D Ribonuclease Inhibitor 526 604 IPR032675 -
Vian7g01085 1086 Gene3D Ribonuclease Inhibitor 233 329 IPR032675 -
Vian7g01085 1086 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Vian7g01085 1086 PRINTS Leucine-rich repeat signature 412 425 - -
Vian7g01085 1086 PRINTS Leucine-rich repeat signature 624 637 - -
Vian7g01085 1086 SMART LRR_sd22_2 313 342 - -
Vian7g01085 1086 SMART LRR_sd22_2 481 510 - -
Vian7g01085 1086 SMART LRR_sd22_2 265 291 - -
Vian7g01085 1086 SMART LRR_sd22_2 624 649 - -
Vian7g01085 1086 SMART LRR_sd22_2 168 194 - -
Vian7g01085 1086 SMART LRR_sd22_2 527 553 - -
Vian7g01085 1086 Gene3D Phosphorylase Kinase; domain 1 729 833 - -
Vian7g01085 1086 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Vian7g01085 1086 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 729 833 - -
Vian7g01085 1086 Gene3D Ribonuclease Inhibitor 330 427 IPR032675 -
Vian7g01085 1086 Gene3D Ribonuclease Inhibitor 428 525 IPR032675 -
Vian7g01085 1086 Gene3D Ribonuclease Inhibitor 605 691 IPR032675 -
Vian7g01085 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 834 1053 - -
Vian7g01085 1086 Gene3D Ribonuclease Inhibitor 142 232 IPR032675 -
Vian7g01085 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 878 890 IPR008271 GO:0004672|GO:0006468
Vian7g01085 1086 ProSitePatterns Protein kinases ATP-binding region signature. 766 789 IPR017441 GO:0005524
Vian7g01085 1086 Pfam Leucine rich repeat 606 660 IPR001611 GO:0005515
Vian7g01085 1086 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Vian7g01085 1086 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 189 280 - -
Vian7g01085 1086 SUPERFAMILY RNI-like 305 664 - -
Vian7g01085 1086 SMART LRR_typ_2 168 192 IPR003591 -
Vian7g01085 1086 SMART LRR_typ_2 433 457 IPR003591 -
Vian7g01085 1086 SMART LRR_typ_2 624 647 IPR003591 -
Vian7g01085 1086 SMART LRR_typ_2 289 313 IPR003591 -
Vian7g01085 1086 SMART LRR_typ_2 337 361 IPR003591 -
Vian7g01085 1086 SMART LRR_typ_2 551 575 IPR003591 -
Vian7g01085 1086 SMART LRR_typ_2 481 505 IPR003591 -
Vian7g01085 1086 SMART serkin_6 760 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01085 1086 ProSiteProfiles Protein kinase domain profile. 760 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01085 1086 FunFam Leucine-rich receptor-like protein kinase family protein 332 604 - -
Vian7g01085 1086 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vian7g01085 1086 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515
Vian7g01085 1086 Gene3D Transferase(Phosphotransferase) domain 1 834 1055 - -
Vian7g01085 1086 SUPERFAMILY Protein kinase-like (PK-like) 751 1036 IPR011009 -
Vian7g01085 1086 FunFam Putative LRR receptor-like serine/threonine-protein kinase 605 690 - -
Vian7g01085 1086 PANTHER UNNAMED PRODUCT 360 965 - -
Vian7g01085 1086 FunFam Leucine-rich receptor-like protein kinase family protein 30 188 - -
Vian7g01085 1086 SUPERFAMILY RNI-like 77 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01085 Vian-Chr7 19079198 19082557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01085 26 1085 Receptor kinase-like Gene Family AT4G26540 65.858 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian7g01085 Pkinase 1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01085 - - gmx:100813139 1857.8