Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01074 ATGGCACACAGGTTACTCAGAGACCACGAAGCCGACGGTTGGGAGCGTTCTGATTTCCCTATAATATGCGAATCCTGTCTCGGAGACAGCCCCTATGTTCGAATGACAAGGGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTGTTTAGATGGAGACCAGGCAGAGATGCGAGATATAAGAAAACTGAGATATGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGACCTTGAATATGGACTACCTGTTCAAGTCCGAGACACAGCTCTTCATATTGATTCCAATGATGCCATTCCAAAAAGTGATGTTAATAGGGAGTATTTTGCCGAAGAACATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCTTCTTATGGCAAAGCACGCCCTAATGATACTATCCTGAAGCTTCAAAGAACAACCCCTTATTACAAAAGAAACAGAGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCGGAGTGCCCTTATAGACACGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAACGATCCAGTGGCCTTGAAGCTACTTGGCAAGGCAGGGGAGATGGCCACACTGGAGGCTCCTGAGGACGAGAGCATCAAAACACTCTATGTTGGTGGGCTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGACCACTTCTATGCCCATGGAGAAATTGAATCTATAAAAATGGTTCTGCAACGGGCTTGTGCTTTTGTATCATATACTACCCGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCTGAGTCAGATGGCTCTGATCAAGCTAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGCAACAGAATCAGGACCAAACACAAGGAACATTTTTCTATAACAATCCACCACCTATGCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTTCATCTCAAGACGGACCTCCTGGTGGGCCTTCTGGGTCCGGAGAGAACAAGTCCAGTTTGGAGAAGCAGCAAATGCAACACTATGCCCGACCAATGATGCCTCCTCCACCTGGCCAATATCACCATCAGTATTACTCTCCATATGGTTATATGCCGCCAGTCCCCCCTTATCAACAGTACCCGCCACCTCCATACAATACTGCTGTTCCTCCATCCCAGCCGCCCGCTCCAAATCATCCTTATCAGCATTCTACGCAACCAGGGTCTTCACAGACAGAGTCTGTACAGGCTGCACCTGCCCCAGCTGAATCTGGAACATCAACATCAGGGTCACAGCAGCAATGA 1458 0.4691 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVSYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGTFFYNNPPPMQQERSYYPSMDPQRMGALISSQDGPPGGPSGSGENKSSLEKQQMQHYARPMMPPPPGQYHHQYYSPYGYMPPVPPYQQYPPPPYNTAVPPSQPPAPNHPYQHSTQPGSSQTESVQAAPAPAESGTSTSGSQQQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01074 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Vian7g01074 485 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Vian7g01074 485 MobiDBLite consensus disorder prediction 453 485 - -
Vian7g01074 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Vian7g01074 485 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Vian7g01074 485 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Vian7g01074 485 MobiDBLite consensus disorder prediction 334 485 - -
Vian7g01074 485 Gene3D - 212 310 IPR012677 -
Vian7g01074 485 SMART rrm1_1 229 297 IPR000504 GO:0003723
Vian7g01074 485 Pfam Torus domain 139 194 IPR032297 -
Vian7g01074 485 Gene3D - 149 205 - -
Vian7g01074 485 MobiDBLite consensus disorder prediction 304 320 - -
Vian7g01074 485 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Vian7g01074 485 MobiDBLite consensus disorder prediction 377 396 - -
Vian7g01074 485 MobiDBLite consensus disorder prediction 299 321 - -
Vian7g01074 485 MobiDBLite consensus disorder prediction 420 452 - -
Vian7g01074 485 CDD RRM_RBM22 227 300 - -
Vian7g01074 485 MobiDBLite consensus disorder prediction 334 360 - -
Vian7g01074 485 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Vian7g01074 485 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 381 IPR039171 GO:0003723
Vian7g01074 485 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01074 Vian-Chr7 18959013 18962412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01074 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 4.52e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01074 K12872 - gmx:100778975 852.432