Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01072 ATGCAATCAAAATCTGAAACTGCTAAGCCGAGGTCAAATCCACATTCCTTTACGCCTAACACTGTTTATTCTGAACCCTGGTGGAGAGGTATTCATTACAATTCTGCTCCGAAAGCAATGTCAGGGGTGAATGCATCAAATTCATCATCACTTGAACGCCCTAATGCCGATTCTGAATCCAGTGAAGGTCAATCTTTGTCCAACAATGAGATGAATGAGGAAGATGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAAGACCACCAAGCCATGCTGCGTTCTTCATCATCTGCACCTTCTAGGCGTGATGACTGCCTTCCACATGCTCCACAACTGGAACTTATTGGCCATTCATTTGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGACGAAGACAGGCTCGAGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGTCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAAGCTTCAAAACACACGAACAAGGAAAAGGATACGGGTGCAGCAGGTCCAGTTTCATTGCCACAGTCAGTTAGTTCATCTGGGTTGGGACCAGTACCCTCTGAAGTGCATGAGAGATTTGAAAAACACAACTACGCAAATGTTTTGCAGTCATCATCTGCGTTCTGTTTGCACTCCGGTGAGAGAGTAGAGGAGGGAGACTGTTCAGGTCAACAACGAGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAA 903 0.4496 MQSKSETAKPRSNPHSFTPNTVYSEPWWRGIHYNSAPKAMSGVNASNSSSLERPNADSESSEGQSLSNNEMNEEDDDATKESQPTAPNQSGNYGQDHQAMLRSSSSAPSRRDDCLPHAPQLELIGHSFGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASKHTNKEKDTGAAGPVSLPQSVSSSGLGPVPSEVHERFEKHNYANVLQSSSAFCLHSGERVEEGDCSGQQRGSISSEQSSQRRLAIQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01072 300 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 9 269 IPR001289 GO:0003700|GO:0006355
Vian7g01072 300 MobiDBLite consensus disorder prediction 39 68 - -
Vian7g01072 300 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 150 205 IPR001289 GO:0003700|GO:0006355
Vian7g01072 300 Gene3D - 148 210 - -
Vian7g01072 300 ProSiteProfiles NF-YA/HAP2 family profile. 148 208 IPR001289 GO:0003700|GO:0006355
Vian7g01072 300 MobiDBLite consensus disorder prediction 272 300 - -
Vian7g01072 300 MobiDBLite consensus disorder prediction 281 300 - -
Vian7g01072 300 MobiDBLite consensus disorder prediction 210 245 - -
Vian7g01072 300 MobiDBLite consensus disorder prediction 82 110 - -
Vian7g01072 300 PRINTS CCAAT-binding transcription factor subunit B signature 151 173 IPR001289 GO:0003700|GO:0006355
Vian7g01072 300 PRINTS CCAAT-binding transcription factor subunit B signature 182 205 IPR001289 GO:0003700|GO:0006355
Vian7g01072 300 MobiDBLite consensus disorder prediction 1 114 - -
Vian7g01072 300 MobiDBLite consensus disorder prediction 1 23 - -
Vian7g01072 300 SMART cbf3 147 208 IPR001289 GO:0003700|GO:0006355
Vian7g01072 300 ProSitePatterns NF-YA/HAP2 subunit signature. 153 173 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01072 Vian-Chr7 18950423 18952034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01072 75 300 CCAAT-HAP2 Transcription Factor Family AT3G20910 47.619 1.25e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian7g01072 CBFB_NFYA 9.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01072 K08064 - gmx:102664020 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00550 6 21088775 21091488 Vian7g01072 7 18950423 18952034 PCT