Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01041 ATGGTTTCTTCAGACAAAAGTGAAGATCAAAATACACCTTCTGATAAATTGCAGCATAGAGCGAGTCCTGATAGTGATGTTACATTGTCTCAAGGTCATGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCCACAAGTATTCCTTCTGCTGTAGCTAAAAATGAAGAGGGGAAGGACTCCGGTGCTACTGCCTGTGCCCTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACCTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCTAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTCAAGGGGAATGAATTTATACGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCTAATAATGGGAACATCACAGATTGTGTTTCTATCGGACAGCATAATCATCCTAGGCCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTACCGGTTGTTGAACAAGCAGCACGCAAACCCTTGTTAGCCAATGTGAAAGACAAAACATCCGTTGAGCAAGGATGCACGTCTCAACAAATCAAGCCTTTACAGTCCTTTCCGACTGCAAAAGTGTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTGTCTAAGGCAAAGAATCCGATTCATGACAACGAAGATCCTGAGTCAAAGCGACTGAAGAAAGACAATAGTAATGTTGATGCCACTGGAATTACCATGTCAACTCGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAACTCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAACGACCATGAATGGCAAGGCAGGAACCAAATCTGAAGATACTGCTGTTAATAGAGGGGAACAAACTGGCTTGGGCTCAGCAAGCAAATTAACAGAGCAACTAAATGGCAAGTCAACTACTAAGTCAAAGGTCGGTGATATTGTTGAGTTTGGCGTGAGCAGTCTTTCTAATGAGGGTCCTAAAATTAAATTAAGTGAGCAACAGCAAAAAGATAACTCAGGTACTAAAGACGATTCTGTCAGCAATGATGTTATATGCCATTCTAATTCTGGAGTTCCGTGTAGATCCAATGAACAGCTGAAATGTGAGGTAAAACCTTTATCAGAAGGAACTAAGGATTGCCTTAACAACAAGGTTGCCATTCATGATACCTCCAGTACAGAAAGCTAA 1479 0.4158 MVSSDKSEDQNTPSDKLQHRASPDSDVTLSQGHDTKNDLSKPEGATSIPSAVAKNEEGKDSGATACALESDQEGSTCSLPPEKHLQSPDTLLNELPPLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSNNGNITDCVSIGQHNHPRPQLNSTVSVECVLPVVEQAARKPLLANVKDKTSVEQGCTSQQIKPLQSFPTAKVSPVNELKAAHLQLSKAKNPIHDNEDPESKRLKKDNSNVDATGITMSTRESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHELPPGRTVTHNAATNTHTTTMNGKAGTKSEDTAVNRGEQTGLGSASKLTEQLNGKSTTKSKVGDIVEFGVSSLSNEGPKIKLSEQQQKDNSGTKDDSVSNDVICHSNSGVPCRSNEQLKCEVKPLSEGTKDCLNNKVAIHDTSSTES 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01041 492 Gene3D WRKY domain 102 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 Gene3D WRKY domain 275 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 SMART WRKY_cls 113 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 SMART WRKY_cls 288 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 MobiDBLite consensus disorder prediction 1 22 - -
Vian7g01041 492 MobiDBLite consensus disorder prediction 242 261 - -
Vian7g01041 492 MobiDBLite consensus disorder prediction 382 402 - -
Vian7g01041 492 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 MobiDBLite consensus disorder prediction 68 83 - -
Vian7g01041 492 MobiDBLite consensus disorder prediction 92 107 - -
Vian7g01041 492 MobiDBLite consensus disorder prediction 239 269 - -
Vian7g01041 492 FunFam WRKY transcription factor 57 274 348 - -
Vian7g01041 492 MobiDBLite consensus disorder prediction 420 453 - -
Vian7g01041 492 ProSiteProfiles WRKY domain profile. 108 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 365 IPR044810 GO:0003700
Vian7g01041 492 MobiDBLite consensus disorder prediction 1 109 - -
Vian7g01041 492 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 FunFam WRKY transcription factor 100 173 - -
Vian7g01041 492 ProSiteProfiles WRKY domain profile. 283 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01041 492 Pfam WRKY DNA -binding domain 114 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01041 Vian-Chr7 18624301 18626610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01041 98 370 WRKY Transcription Factor Family AT2G04880 49.104 4.39e-86 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian7g01041 WRKY 2.7e-25 CL0274