Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01019 ATGCGAATAAACAATCATAGATTGAAAAAAGCTCAAAGCGAAAGCAGGAGGAGCGCGGGCGAGCACGACGAGCACGCGAACCAGGCGAACGGAGCGCGACCAGCGAACGGCGAGCGCGAACCAGGCGAACGGCGAGTCCGAAAGCCAGCCAACGAAGCGCGACGGCGCCCTAAACTCAAAAACGACTTCCTCTTCGATTACACCGAACTCAAAAACCGAGTTTGCCGCGAGTTTGATAACCTTGGTCGTAACCCTTGCTTGATTACTGTTTCAAAGTGCAATCGCGTGATGTCGAGGATTTGTATGAAGAATCTTCTTAAACATGTTGCGGAGGATGAACTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTCAAGCTCATGCGTACCAAAGATGGTAAGAGTAGGCAATTCGCGTTTACAGGGTATCGAACAGAAAAGGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTACATGTGAGAATGGTGTGGATGTTGATGACCCACAGCTTCCGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACTTCCGGTTTGACCAGTGTTGGCAACAACAGAGCAGTCTCAAATAAGGATAATGAAGGTGCATCAGTTTCAACTGATGACAGTGGCTCATTGGAAGATGGATTTCTGGATATTTCCGAACCCAGTGGCAAGTCACATGAGCCTGACCGTGATGAGGTAGACGTAGAGGGCAAAGAAGATACTAGTAGAGAGAAGGTTACCCATGAAAAATCTCAACTAAATGTGATTGAGCATGGGAGCCGATTATCAAAAACAGAAGATGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTTCCATACACGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTATCTCACAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACGTCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTTCTCAATTTAGTGACAACCACAATGGATTTCAAGCTATTAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGATTTGATGACTAA 1272 0.4473 MRINNHRLKKAQSESRRSAGEHDEHANQANGARPANGEREPGERRVRKPANEARRRPKLKNDFLFDYTELKNRVCREFDNLGRNPCLITVSKCNRVMSRICMKNLLKHVAEDELREFFSEKGIITDVKLMRTKDGKSRQFAFTGYRTEKEAHEAIRYFNNSFLRTSKITCENGVDVDDPQLPDFLQVMQPRVNSKMWANDTSGLTSVGNNRAVSNKDNEGASVSTDDSGSLEDGFLDISEPSGKSHEPDRDEVDVEGKEDTSREKVTHEKSQLNVIEHGSRLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFSHIGSISQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRRLVIERAKEGESLEELRARTASQFSDNHNGFQAIKLSKKRKDVDILDEGKMKFGRFDD 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01019 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 374 IPR000504 GO:0003723
Vian7g01019 423 Gene3D - 216 381 IPR012677 -
Vian7g01019 423 MobiDBLite consensus disorder prediction 199 270 - -
Vian7g01019 423 MobiDBLite consensus disorder prediction 37 55 - -
Vian7g01019 423 MobiDBLite consensus disorder prediction 199 229 - -
Vian7g01019 423 PANTHER RNA-BINDING MOTIF PROTEIN 14B 91 272 - -
Vian7g01019 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 168 IPR000504 GO:0003723
Vian7g01019 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 367 IPR000504 GO:0003723
Vian7g01019 423 SUPERFAMILY RNA-binding domain, RBD 98 175 IPR035979 GO:0003676
Vian7g01019 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 175 IPR000504 GO:0003723
Vian7g01019 423 CDD RRM1_MRD1 98 171 - -
Vian7g01019 423 MobiDBLite consensus disorder prediction 7 28 - -
Vian7g01019 423 Gene3D - 98 173 IPR012677 -
Vian7g01019 423 MobiDBLite consensus disorder prediction 239 270 - -
Vian7g01019 423 MobiDBLite consensus disorder prediction 1 55 - -
Vian7g01019 423 SMART rrm1_1 296 370 IPR000504 GO:0003723
Vian7g01019 423 SMART rrm1_1 99 171 IPR000504 GO:0003723
Vian7g01019 423 SUPERFAMILY RNA-binding domain, RBD 293 379 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01019 Vian-Chr7 18485625 18491725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01019 100 390 Eukaryotic Initiation Factors Gene Family AT4G34110 24.920 6.83e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01019 K14787 - vum:124822831 285.034