Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01003 ATGCGGGCCAATGTAGTAGTGGCTCACCTTCCTCCATATCTTCCACCCCCTTGGCTTTTTAGCGGTTGCAAACACATATCATTCATCCCTAACCTTCACTTCTATTACTCTCTTTTGCTGCACCAGTTGCAAACGCATCAAAGGAGGAGTAGTATAACCACCATGCCTGCACAAGCTCTGCTATCATCTTCATCTCTTGTCCTCTCAGCGGAGGCTGCCAGACAGACTCTCGGACCACGATCACACCAATCTCCCTTTGCCTTCTCCCGAAAAGCCTCCTTCATTGTTAAGGCAGCATCTACTCCCCCTGTCAAGCAAGGAGCAGACAGACCTTTATGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCCGGTGACTATGGATTTGACCCTCTTGGACTTTCGGACCCTGAAGGAACAGGAGGGTTCATCGAGCCCAAATGGCTAGCGTATGGTGAGATCATCAATGGTCGTTATGCAATGTTGGGTGCAGTTGGAGCCATAGCACCTGAAATTCTCGGCAAGGCTGGTCTGATCCCTCAGGAGACAGCACTGCCATGGTTCAGAACCGGTGTGATCCCACCTGCAGGAACATACAACTACTGGGCAGACTCGTACACGCTCTTTGTGTTTGAGTTGGCACTGATGGGATTTGCAGAGCACAGAAGATTCCAAGACTGGGCGAAACCAGGGTCTATGGGGAAACAATACTTCTTAGGACTAGAAAAAGGTCTTGGAGGTTCCGGTGATCCAGCATACCCCGGAGGACCTTTGTTTAACCCTCTTGGTTTTGGAAAGGATGAGAAGTCGTTGAAGGATTTGAAGCTGAAGGAAGTCAAGAATGGAAGGTTGGCTATGTTGGCAATCTTGGGTTACTTTGTTCAAGCTCTTGTGACAGGTGTTGGTCCATACCAGAACCTCCTAGATCATCTTGCTGACCCTGTTCACAACAACATCTTGACCAGTCTCAAGTTCCACTGA 993 0.4884 MRANVVVAHLPPYLPPPWLFSGCKHISFIPNLHFYYSLLLHQLQTHQRRSSITTMPAQALLSSSSLVLSAEAARQTLGPRSHQSPFAFSRKASFIVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVIPPAGTYNYWADSYTLFVFELALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01003 330 Gene3D Chlorophyll a/b binding protein domain 112 329 - -
Vian7g01003 330 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 75 325 IPR001344 GO:0009765|GO:0016020
Vian7g01003 330 FunFam Chlorophyll a-b binding protein, chloroplastic 111 329 - -
Vian7g01003 330 Pfam Chlorophyll A-B binding protein 121 300 IPR022796 -
Vian7g01003 330 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vian7g01003 330 SUPERFAMILY Chlorophyll a-b binding protein 109 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01003 Vian-Chr7 18350911 18352109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01003 73 330 Chloroplast and Mitochondria Gene Families AT1G61520 85.659 1.83e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01003 K08909 - gmx:100808379 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01003 7 18350911 18352109 Vian7g01003 7 18350911 18352109 ECH