Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01000 ATGGAGATGCAACAGCTCCTCAGTATGGGCTTCCCCGATGAGTTAGCCGCCCAAGCCTTGGCCGCCACCGGCGGTAAATCCACCGTCAAAGCCACCGAGTGGATTCTCACTCACAAATCTAACGCCGCCAACACCTCCACATTCCAGCCCAAACTTGATCGCTTCTTCCATTTTTCTCAATCCCCCACACCTCCACAATCGCAATCACAGGAGGAAGAAGAAGAAGACGAAGAGCCTTCCAAACGTCTCAGGCCTTCTACACTTTCTGCGCAGAATCCACAGCCACAGCAACAAAACTGGCCCCCTTTTTTCTTCAAAACCGCAGACAAGAAACACGCCAACACTCACATTCACCAACCCTTGTACGAGCGCTTGCGTCCCAGAACCCTCGACGACGTCGTAGGTCAGGACCATCTCCTCGCCGCCAACTCCCTTCTTCGCTCCGCAATCCAACGCAACCGCCTCCCCTCCATCCTCTTGTGGGGTCCACCTGGTACTGGTAAGACCACTATCGCCAAAGCCATCGTTAAATCTTCAACCTCAACACGTTACCGGTTTGTCTCCTTATCCGCCGTCACCAGTGGCGTTAAGGACGTGAGGGACGCCGTTGACGAGGCCAGAAAACTCAGACTTAAATCCAACCAATCCACCGTTCTCTTCGTGGACGAGGTTCACAGGTTCAACAAGTCCCAGCAGGACTCTTTCTTACCCGTCATTGAAGACGGCAGCATTGTATTCGTCGGGGCCACCACTGAGAACCCTTCTTTCCATTTGATTACACCTCTCTTGTCTCGCTGCCGTGTCCTCACCCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGCGCTGTCAGTGAGACTGACAGAGGATTGATGCAAAGCGCGGGGGTTCAAGTTGATGTTAAAGAGGACGTTGTTGATTATATAAGCAACAATTGTGATGGAGATGCTCGGGTGGCCCTTAATGCTCTGGAGATTGCAGCTGTTACAGCAGCAGCGAGGGTACAACATGGTAAACAAAAAGAAGGGGTGGAAGATCTTCACACAAACGAGGATTATAAGGTTGCTGCTGCTGTTGTTAGTGTTGATGATGCAAGGGAGGCACTTCAGTGCAAGCATCTTGCTTACGATAAAGCTGGGGAAGAGCACTATAATCTAATCAGTGCGCTGCACAAGTCTATGAGGGGAAGCGATGCAAATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGAGGTGAAGAGCCTCTTTACATTGCACGCAGACTCATACGATTCGCAAGTGAGGATGTTGGTTTGGCTGACCCATTAGCTCTTAATCAGGCTGTTTCTTGCTACCAAGCTTGCCACTTCTTGGGAATGCCCGAATGCAATGTAATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCACCTAAATCTGTTGCGGTTTATCGAGCCTTAGGGGCAGCGCAGAAGGCAGTGAGGGAATCTGCTGGACAGAATGAGGGGGTGCCTCTACATTTGAGGAATGCTCCAACCAAATTAATGAAGGAAATTGGGTATGCTAAGGGATACATCTATCCCCCGGACAACCCTTCCTCCACACAGACTTACTTGCCACCTTCACTTCAAGGCTACAAGTTCCTTGATTGGCCTGACAGGATTCCTTATGATGGATGA 1671 0.5045 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNAANTSTFQPKLDRFFHFSQSPTPPQSQSQEEEEEDEEPSKRLRPSTLSAQNPQPQQQNWPPFFFKTADKKHANTHIHQPLYERLRPRTLDDVVGQDHLLAANSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVKSSTSTRYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQSTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVSETDRGLMQSAGVQVDVKEDVVDYISNNCDGDARVALNALEIAAVTAAARVQHGKQKEGVEDLHTNEDYKVAAAVVSVDDAREALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRALGAAQKAVRESAGQNEGVPLHLRNAPTKLMKEIGYAKGYIYPPDNPSSTQTYLPPSLQGYKFLDWPDRIPYDG 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01000 556 SMART AAA_5 154 274 IPR003593 GO:0016887
Vian7g01000 556 MobiDBLite consensus disorder prediction 84 102 - -
Vian7g01000 556 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Vian7g01000 556 Pfam MgsA AAA+ ATPase C terminal 399 545 IPR021886 -
Vian7g01000 556 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 551 - -
Vian7g01000 556 FunFam Putative AAA family ATPase 373 476 - -
Vian7g01000 556 Pfam ATPase family associated with various cellular activities (AAA) 158 268 IPR003959 GO:0005524|GO:0016887
Vian7g01000 556 Gene3D - 108 272 IPR027417 -
Vian7g01000 556 Gene3D - 2 50 - -
Vian7g01000 556 Pfam AAA C-terminal domain 301 398 IPR032423 -
Vian7g01000 556 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 552 556 - -
Vian7g01000 556 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 162 181 - -
Vian7g01000 556 SUPERFAMILY post-AAA+ oligomerization domain-like 383 549 IPR008921 GO:0003677|GO:0006260
Vian7g01000 556 Gene3D - 373 476 - -
Vian7g01000 556 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Vian7g01000 556 Pfam UBA/TS-N domain 4 35 IPR015940 -
Vian7g01000 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 338 IPR027417 -
Vian7g01000 556 Gene3D - 274 350 - -
Vian7g01000 556 MobiDBLite consensus disorder prediction 56 102 - -
Vian7g01000 556 FunFam Replication-associated recombination protein A 110 273 - -
Vian7g01000 556 FunFam AAA-type ATPase family protein 274 353 - -
Vian7g01000 556 CDD AAA 134 267 - -
Vian7g01000 556 CDD HLD_clamp_RarA 274 335 - -
Vian7g01000 556 Gene3D - 477 552 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01000 120 328 Core DNA Replication Machinery Family AT1G77470 28.837 4.74e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01000 K07478 - gmx:100799257 900.968