Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00989 ATGAGAACTTTACTTCCTCAGAAGGGCGTCAAGACAAATACTTGTTCCCAGGATTTTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTTATCAGATGCTCCTTTGGATAAATCTTCCATTCATCTGTCTCTTAAAAATAAGGTCATCTCCCCATCAGCAAAAGGTGCACAGTCATTGCCAGTTACTCCATTTGCAACTTCAGCTTCAGAGACCGCAGATGGAGGACATCTTAAAATGGGTGGTCATCCGCATATTATTCGATCATTTTCAGTCCCAGTTAAAAGCAAAGCCGCTAGTTTAAGGGTTACAGATGCCACGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGACACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAGAGGTGATCTCGCACTTGCTCACCGGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGAACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTAAAAATTTGCAATCGTGAAACTACTGCTAGGCAGACATCAAATGTGCCACCACGGGCAGAAGTATCTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTTCTTACTTTTGTTTTCTAGAGCAACTACTGGTATGTTTTTCTTTGTACCTGCAATGA 795 0.4277 MRTLLPQKGVKTNTCSQDFERTGLIVPKTPLSDAPLDKSSIHLSLKNKVISPSAKGAQSLPVTPFATSASETADGGHLKMGGHPHIIRSFSVPVKSKAASLRVTDATGLIRVISARQTVRRKSSDGGLVPEIAIEDDTEDIPEEQAVCRICLVELGEGGNTLKMECSCRGDLALAHRECAVKWFSIKGNRTCDVCKREVQNLPVTLLKICNRETTARQTSNVPPRAEVSYYRIWQDVPVLILVSMLSYFCFLEQLLVCFSLYLQ 264
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00989 264 ProSiteProfiles Zinc finger RING-CH-type profile. 140 202 IPR011016 GO:0008270
Vian7g00989 264 SUPERFAMILY RING/U-box 144 199 - -
Vian7g00989 264 SMART ringv_2 147 196 IPR011016 GO:0008270
Vian7g00989 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 204 IPR013083 -
Vian7g00989 264 PANTHER OS02G0165000 PROTEIN 2 257 - -
Vian7g00989 264 Pfam RING-variant domain 148 195 IPR011016 GO:0008270
Vian7g00989 264 CDD RING_CH-C4HC3_MARCH 148 196 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian7g00989 Vian-Chr7 18232141 18235324 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00989 134 202 C3H Transcription Factor Family AT2G37950 44.286 1.64e-14 68.9