Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00984 ATGCCCAAACCGAATAACCAAGATACGACATGGAATGGAAAACCACTTACCGTAGTCGTCGGACAATCGTCACCGGAACTTGCCATTACGCACGATAACAGGAGACCAAACTGGCCGGAGACAACAGGATGCAAATGGAACGAAGCGAGACGAAACGCGACCTTCCACCTCTCAAGAGAACGGACCTTCGTTTGCAATGGAACAGAGAAAGGGAAAGGCAATGGACCAGAGAAAGGGGAAGGGGCTTGCATGCATGCTCGAGTTTCGTTTCTTCATTCATGTATGAAGGAGGATTCTGACTGCGCCGAAGAAGCGGAGAAGAAGCGGAGAAGAACAATAGTGACAATGGAAGAGGAGGGGTGGAAGGGGAAGAGATCCTCCGATCCACGTCCATGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGGCACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCAACAGCAGCAGCAGCAACGACAACAGCAACAACAGATGACGATGATAATGAGCCAGGAAGACCACGAGGTGGCTGCCTGTTTGCTTCTGCTGGCGAATTCCAACAACAGCAACAGAGAGAAAGGGAAAGAGAAAGAGAAGGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGCTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCGAACACTGGTAATAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACATGAACATGAACATGAGTGGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGGGAAAACCTTCTCCTCCTTGACTCACCTAAGTCCTCCCTCGACTTGAATTCTCCTCCCCTCACTCTCGATTTGAGAAGTTTATATGCTTATCTTGATCCTATCAGGCTAGAGTTTCTTGATCCAGAAAGTTCATATGAGATCAAGCCATCCACTAATGCTATGCAGATGGAGAATGCTTGCAGAAGTGAGAATGAAGAATCAAAAGCTACCGAATATACCCCAGGCTTAAAGGGAGAAAAACTGAAAGCAGGCTGCAATTCTGTCTTGGTGAAGCGTAATGCTGTGAACCAGAAACCTTCATCTGGGCAACAGCATGGTGAATATAACCTCTCGCATTTTCCGAACTAG 1302 0.4977 MPKPNNQDTTWNGKPLTVVVGQSSPELAITHDNRRPNWPETTGCKWNEARRNATFHLSRERTFVCNGTEKGKGNGPEKGEGACMHARVSFLHSCMKEDSDCAEEAEKKRRRTIVTMEEEGWKGKRSSDPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHHQQQQQQRQQQQQMTMIMSQEDHEVAACLLLLANSNNSNREKGKEKEKEEEVQQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGNNVSIGLGIGSSGKCEEENVNMNMNMSGDGHKCSICLRVFSTGQALGGHKRCHWENQKGENLLLLDSPKSSLDLNSPPLTLDLRSLYAYLDPIRLEFLDPESSYEIKPSTNAMQMENACRSENEESKATEYTPGLKGEKLKAGCNSVLVKRNAVNQKPSSGQQHGEYNLSHFPN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00984 433 SMART c2h2final6 130 152 IPR013087 -
Vian7g00984 433 SMART c2h2final6 290 312 IPR013087 -
Vian7g00984 433 SMART c2h2final6 226 248 IPR013087 -
Vian7g00984 433 MobiDBLite consensus disorder prediction 156 186 - -
Vian7g00984 433 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 99 340 - -
Vian7g00984 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 317 IPR013087 -
Vian7g00984 433 Pfam C2H2-type zinc finger 226 249 - -
Vian7g00984 433 Pfam C2H2-type zinc finger 131 154 - -
Vian7g00984 433 Pfam C2H2-type zinc finger 290 314 - -
Vian7g00984 433 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Vian7g00984 433 ProSitePatterns Zinc finger C2H2 type domain signature. 292 312 IPR013087 -
Vian7g00984 433 SUPERFAMILY beta-beta-alpha zinc fingers 129 248 IPR036236 -
Vian7g00984 433 MobiDBLite consensus disorder prediction 412 433 - -
Vian7g00984 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Vian7g00984 433 Gene3D Classic Zinc Finger 223 312 - -
Vian7g00984 433 MobiDBLite consensus disorder prediction 166 186 - -
Vian7g00984 433 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Vian7g00984 433 SUPERFAMILY beta-beta-alpha zinc fingers 288 316 IPR036236 -
Vian7g00984 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00984 Vian-Chr7 18171166 18175313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00984 130 344 C2H2 Transcription Factor Family AT4G35280 52.778 5.47e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian7g00984 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00984 - - vun:114195192 384.415