Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00982 ATGGAATATGGGGGGTTGGTGCAAAATTGTGGGTTTGGGAGCTTGTGGGAGTGTGATTCGGCCTCGGAAGAAGATTCGATCGAGGAGGTGCTGGCAGAAGGTTGCTGGGTGGAAACGAGTGGCGTTGGGAGCTGCGAGGCTCAGTATATTGGAAGTTCAGAAGCGGAGATGGAGGTGGAGTTGAGGAAGAGATGGTGGATTGGACCCAACAAGGTTAATTCCTCCGTCAAAGACAGACTGGTGGTGGCTGTCTGTTATCTCAGAGAATGCACAAAGAACTCCAATCTCATGATTCAGGTGTGGGTTCCCTTACGCAGAGGGCTTGTAGCTGGGCCTGAGTATCTCACCAGAAATTTAGATGACTGGGTTGCAGTTGAGATGAACATGAACGTCAACATGAACAGCGCAAGGGACGTCAGCCTTCGCTTCTACCGAAGCCAGGAATACCCTCGGCTTCCTTATTATGTTGATCTTCCTGGTTCTTTAGCCCTCCCGGTGTTCGAAAGAGGCACCGACACATGCCTCGGTGTCATCCAGATTCTAACGCCTCCCTGCGACACCGTCAACTATTGCCCGCAGCTTCTTAACAATAATCTTCTCTGCAATCCTTTCCAGGCATTCGAGGAGGTGTACGAAGCAGCGGTGAATGAGATTGTGGAGGTGATGAGGTGTGTGTGCAGGGCGCAGAATGTGGCATTGGCTCTCAGCTGGGCTCCTTGTTGCATCCAGCAAGGAGGGAAGTGTGGTGGGTATGGCCATTCCACGGAGAATCACTTGTCAACAGTGGAGAGAGCGTGTTTTGTGGGAGATGCACAGGTTCTGGGCTTCAAGGAGGCTTCTTCTCAGCATCATCTCTTGCGAGGACAGGGAATCGTTGGCACGGCCTTCACAACGGCCAAGCCCTGCTTTGCGATCGACGTAGCCGCCTTCACCAGAGCCCAGTATCCTCTGGCTCACCACGCCAACATCTTTGGCCTGCACGCTGCCGTCGCCATTCCTCTAAGAAGCCTCTACACCGATTTTGTCGTCGAGTTCTTCCTTCCTAAGGACTGCCGTGACAGGGAAAATCAAAGCCACTTCCTCAGCTCCATATCCCTCATCCTTCAGCAGTCTTGCCGCACCTTGCATGTTGTCATGGGGGACGAGTTCACGTTGCCCCCGCTGCCGCCGCCTCCGCCGCCACAGCCGCAGCCATACGTTAATAACAAAGAGGAAATAGTTATGAGTGAGAAATCGGACTCGCAGTGGCAGGCAGAAGCGTGCGGGTCGTGGATCGCGCACATGATGGAGGCCCAGGCCCAGGAGCAGAAGGCGAAAGGAGTGTGCGTGTCGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAGGCAAGTGCAGGTGGGAGAGTGGCAGCAGCGGCGCTTACGATGCAGTAGAGGTTCAGGAGCAGCATGTGTTCGGCGATGAATCTCAGACCCAAACACAAACACAGAATTTTGGTGGGCGACGTGGCAGAAAGTCCGGCGAAAAGAGGCGTACGAAGGCGGAGAAGACCATCAGTTTGCCAGTTCTGAGACAGTACTTCGCCGGAAGCCTGAAAGATGCGGCAAAGAGCATCGGAGGTGAGATTTATATTATATATATATATATATATGTATATATATTGATAATCAGATCAATCAAACTCAATATATCCGTTCTACAGCACGGCATCACGAGGTGGCCATCGAGGAAGATAAAGAAAGTAGGACACTCTTTGAAGAAGCTTCAGCTAGTGATCGATTCGGTGCAGGGTGCAGAGGGTGCCATACAGATCGGCTCTTTCTACAACAGTTTTCCAGAGTTGAGCTCTGCCACCTCTCAGTCAAAGAACAATAACAGCAGCAACAACAACTCCTCCTCCTTGTACGGCCATTCCCCACCGTCATCCTCCTCTCCTTCCACCGTGCCTCCTCAACAGCAGCACCTGTATTTCAGCACTCCCAACGTCTCCCAAACAGGTCTTCGAGTGAAGGCTACTTTTGGCGATGAAAAAATCCGTTTCAGCTTGCAACCGAAGTGGGGTTTCAGAGATTTGGAGGTTGAGATCGGAAGGCGTTTCAATGTGAAGGATTTGGGGAATTTGGTGATAAAGTATTTGGATGATGAAGGAGAATGGGTTGTTTTAGCCTGCGATGGTGATCTTGAGGAGTGCAAAGACTTGCACACAACCTATGAGAGCCGCACCATTAGACTTGCCCTATTTCAACCTTCTCCTTAA 2247 0.514 MEYGGLVQNCGFGSLWECDSASEEDSIEEVLAEGCWVETSGVGSCEAQYIGSSEAEMEVELRKRWWIGPNKVNSSVKDRLVVAVCYLRECTKNSNLMIQVWVPLRRGLVAGPEYLTRNLDDWVAVEMNMNVNMNSARDVSLRFYRSQEYPRLPYYVDLPGSLALPVFERGTDTCLGVIQILTPPCDTVNYCPQLLNNNLLCNPFQAFEEVYEAAVNEIVEVMRCVCRAQNVALALSWAPCCIQQGGKCGGYGHSTENHLSTVERACFVGDAQVLGFKEASSQHHLLRGQGIVGTAFTTAKPCFAIDVAAFTRAQYPLAHHANIFGLHAAVAIPLRSLYTDFVVEFFLPKDCRDRENQSHFLSSISLILQQSCRTLHVVMGDEFTLPPLPPPPPPQPQPYVNNKEEIVMSEKSDSQWQAEACGSWIAHMMEAQAQEQKAKGVCVSLEYLEEAKEEFKVTGKCRWESGSSGAYDAVEVQEQHVFGDESQTQTQTQNFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGGEIYIIYIYIYVYILIIRSIKLNISVLQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSATSQSKNNNSSNNNSSSLYGHSPPSSSSPSTVPPQQQHLYFSTPNVSQTGLRVKATFGDEKIRFSLQPKWGFRDLEVEIGRRFNVKDLGNLVIKYLDDEGEWVVLACDGDLEECKDLHTTYESRTIRLALFQPSP 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00982 748 MobiDBLite consensus disorder prediction 483 510 - -
Vian7g00982 748 SUPERFAMILY CAD & PB1 domains 659 747 - -
Vian7g00982 748 ProSiteProfiles RWP-RK domain profile. 501 598 IPR003035 -
Vian7g00982 748 SMART PB1_new 663 746 IPR000270 GO:0005515
Vian7g00982 748 PANTHER PROTEIN NLP8 57 743 IPR045012 GO:0003700
Vian7g00982 748 ProSiteProfiles PB1 domain profile. 663 746 IPR000270 GO:0005515
Vian7g00982 748 CDD PB1_NLP 664 745 IPR034891 -
Vian7g00982 748 Pfam PB1 domain 665 745 IPR000270 GO:0005515
Vian7g00982 748 MobiDBLite consensus disorder prediction 483 498 - -
Vian7g00982 748 MobiDBLite consensus disorder prediction 615 650 - -
Vian7g00982 748 Gene3D - 660 748 - -
Vian7g00982 748 Pfam RWP-RK domain 515 578 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00982 Vian-Chr7 18147813 18150225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00982 9 747 NLP Transcription Factor Family AT2G17150 34.490 3.90e-136 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian7g00982 PB1 7.6e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00982 - - var:108322742 1332.78