Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00980 ATGGGAAACTGCTGGGGTTCTCAGCCTCACAGCGAGGTGACCCCAACAACCACCGGTAACCTCAGTACAGCCACACCGGGGATATCTCAGACCATCAGCGGCAGCACCACCACCAGCGGCAGCTATACTACTACAACAACCACAACCACAACAACTACTACTACTTCTGGAAGTGGGAACAGCTCCGTAAATAGCAAGTTCTCGGTGGCAAGCGGTGATCAACCTTATCCAACTGGGCAGATCTTACCCACCTCTAATTTGAGGATTTTCACCTTTGGTGACTTGAAGGCTGCGACTAAGAATTTCAGGGCTGATACAGTTCTTGGAGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGGGCACGTCAAAGGGTGGAAGCGGAACAGTCATTGCCGTCAAAAAACTCAACTCTGAAAGCTTACAAGGAATTGAGGAGTGGCGGTCCGAAGTAAGCTTTCTAGGTCGCCTTTCTCATCCTAATCTTGTAAAACTTCTTGGTTACTGCTTAGAGGAAACTGAACTTCTTCTCGTCTATGAATTCATGCAAAAAGGAAGCCTTGAAAACCATCTATTTGGAAGGGGTTCTGCCGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCAGCTCGTGGTCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGATTTGAAGGCCTCAAACATTCTGCTTGATGGGTCCTATAACGCGAAGATATCAGATTTTGGCTTGGCAAAGTTGGGTCCTTCAGCTAGTCAATCTCACGTGACAACAAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTCAAGAGTGATGTATACGGGTTTGGAGTTGTTTTGGTGGAAATACTAACAGGGCTACGAGCACTTGATTCGAACCGTCCAAGCGGGCAACATAATCTAACAGAGTGGGTGAAACCATACCTGCATGACAGAAGAAAGTTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAGTTTCCATCGAAAGCTGCATTCCGTATAGCTCAGCTTGCTTTAAAATGTCTTGCATCTGAACCCAAACAGCGGCCATCAATGAGGGAGGTTTTGGAGAGTTTGGAGCGAATTCAAGCAGCCAATGAAAAGCCTGTGGAGCCTAAATTACGATCTAATCATACTCGTCAAGCCCACCAGGCTGTGCATCATCGTTCTCCACTCAAAGACGGTAGTTATTAG 1260 0.4659 MGNCWGSQPHSEVTPTTTGNLSTATPGISQTISGSTTTSGSYTTTTTTTTTTTTTSGSGNSSVNSKFSVASGDQPYPTGQILPTSNLRIFTFGDLKAATKNFRADTVLGEGGFGKVFKGWLEEKGTSKGGSGTVIAVKKLNSESLQGIEEWRSEVSFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDLKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDSNRPSGQHNLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLALKCLASEPKQRPSMREVLESLERIQAANEKPVEPKLRSNHTRQAHQAVHHRSPLKDGSY 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00980 419 FunFam Serine/threonine-protein kinase BIK1 70 185 - -
Vian7g00980 419 CDD STKc_IRAK 108 384 - -
Vian7g00980 419 Gene3D Phosphorylase Kinase; domain 1 86 185 - -
Vian7g00980 419 SUPERFAMILY Protein kinase-like (PK-like) 81 383 IPR011009 -
Vian7g00980 419 Gene3D Transferase(Phosphotransferase) domain 1 186 409 - -
Vian7g00980 419 PANTHER OS01G0588500 PROTEIN-RELATED 51 385 - -
Vian7g00980 419 MobiDBLite consensus disorder prediction 388 419 - -
Vian7g00980 419 ProSitePatterns Protein kinases ATP-binding region signature. 108 139 IPR017441 GO:0005524
Vian7g00980 419 Pfam Protein tyrosine and serine/threonine kinase 105 381 IPR001245 GO:0004672|GO:0006468
Vian7g00980 419 SMART serkin_6 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00980 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vian7g00980 419 ProSiteProfiles Protein kinase domain profile. 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00980 419 MobiDBLite consensus disorder prediction 1 70 - -
Vian7g00980 419 FunFam Serine/threonine-protein kinase PBS1 186 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00980 Vian-Chr7 18048092 18050626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00980 84 381 Glycoside Hydrolase AT3G07070 49.669 3.73e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian7g00980 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00980 - - vun:114194495 755.747