Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00978 ATGGCGCTGTGCTCTGACTCCCACTTGGTACCAACCCTTTTTCATAAGTACATGAATGTGCAGCTTGCCTATCGTAGGTTCTTCATGAATCTGCTATTCCTTGCATTCACATTGATCCTATTACATGGATCATCAACAGCAAGAGAAGAAGCTTCCCGACATGATGACGATGATGTCGTCAATATCGGTGCCATATTCACATTGCAAACTATAAACGGCAAAGTTTCCAAAATTGCCATCGAAGCAGCTGAGCAAGACGTAAACTCCGACCCCCGCATCCTGGGGGGACGTAGATTGTCCATAAACGTCCATGATTCCAACTTCAGTGGTTTTCTTGGCTTCATTGGGGCCCTCAAGTTCTTGATGACCGACACAGTGGCTATAATCGGTCCACAAACCTCAGGAATGGCCCATGTGCTTTCGCATCTCGCAAATGAGCTCCATGTTCCCCTACTCTCCTTCACCGCTCTGGATTCCACCCTAACACCTCTCCAGTATCCTTATTTTGTCCAGACAGCGCCCAGCGATCAGTTCCAGATGACTGCAATTGCGGACATGATTAGTAATTATGGTTGGAGAGAAGTCATAGCAATATTCAGTGATGATGATCCGGGTCGAAATGGGGTAACTGTTCTGGGGGATAAACTTGCAGAAAGGGGTTGTAAGTTGTCTTACAAAGCAGCACTGCCTCCTGATCCAACCGCCACTCCAAGCTTTATTATCAGTCAGTTAGTGAAGATTAAGAGCATGGAGTCTCGAATAATCGTTTTACACACCTTCGCCAAAACTGGTCTCCTGGTTTTTGACCTGGCTCAAAAACAAGAAATGATGTCCAAAGGGTATGTTTGGATAGCTACTGCATGGTTATCGACTGTTTTAGATTCATCTGCTTCAAACACTTCTAACTCAATTCTAGGAGTTCTTACCCTTCGCCCTCACACCCCTCAATCCTTAAAAAAACAGGCATTTATCTCAAGGTGGAAACACTTAAGTAATGGCTCAATTGGGTTAAATCCATACGGACTCTATGCCTATGATTCTGTGTGGATGATTGCTCGGGCACTGAACTTATTCTTTGATCAGAAAGGAAGGGTTTCTTTTTCTAACAAAAATTTAAGTAGTACGGGGGAAGAGACTCTGGATCTGGGTGCTTTGAGCATTTTTGATGGAGGGAAGCAACTACTTGATAACATATTGCGCATTAATATGACTGGATTGACTGGACCTATTCACTTTGGTTCAGATAGATCTCCTCCACATCCATCATTTGATATCATTAATGTAATTGCCACAGGTTTTCGGAGCATCGGTTACTGGTCTAATTACTCTGGGCTCTCCGTAATCACCCCAGAGAAACTTCAGTTGAAGCCTGCCAATCGTTCAATTTCAAACCAGCATCTAAAGCCTGTCATATGGCCTGGAAATACCATAGAAAGGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCAACTGAGAATTGGAGTTCCCAACAGAGTTAGTTATAGAGACATAGTCTCACAAATAAATGCCTCCAATGCAGTTCAAGGATATTGCATAGAGATATTCCGAGCTGCCATAAAACTTCTTCCTTATGAAGTTCAGTATAAGTTCGTTCTGTTTGGAGATGGAAAAAATAACCCAAGCTACTATGATCTTGTCAACATGATTACTCTTGATGTTTTCGATGTTGCTGTAGGTGACATTGCTATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCCGATATTAATAAGCTTCTTCATTATTTCAGGAGAAAACACAGTGAGTCCACTTGGTCGAATTGTGTTGATTATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTGACAGTGCAGCAGCTGTCTTCACCCATAACAGGAATTGATAGCTTGATATCCAGCAGTGAACGTATAGGATTCCAAGTAGGCTCGTTTGCTGCAAACTATCTAACCGAGCAACTCAACATCCCCAAACATAGACTTGTTCCTCTTGGCTCGCCAGAAGAATATGCCATTGCCCTTGAAAGAGGAACAGTTGCAGCAGTGGTGGATGAAAGGCCATATGTAGAACTATTCCTTTCAGACCACTGCGAATTCTCAATCAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCTAGGGACTCTCCTTTTGCAGTTGATATGTCAACAGCCATTTTAACTTTATCTGAAAATGGTGAACTTCAGAGGATCCATGAAAAGTGGCTTTCAGAAAAGGCTTGTGCTCATCGCAGTAGTGAGAATGAACAACTTCAATTGAATAGCTTCAAGGGCCTGTTTCTAATATGTGGGATAACATGTTTCGTGGCGCTTTTGATATACTTCTTATCAATGCTACACCAGTTCAGTAAAAAATCCCCTATAAAAGCTGGTCCTTCAAATCGTGACAGCTCGCGTTCTGCACGCATCCAAACATTTCTAGATTTTGTGGACGAGAAAGAAGTCGTATCTCCCAGGAAATTAAAAAGAAAACTGGAACATATTTCATCAAATCGTTTGAGGAGCATATCAAAGAGCAGGAGTGAGAGAGTACAGTAA 2637 0.4259 MALCSDSHLVPTLFHKYMNVQLAYRRFFMNLLFLAFTLILLHGSSTAREEASRHDDDDVVNIGAIFTLQTINGKVSKIAIEAAEQDVNSDPRILGGRRLSINVHDSNFSGFLGFIGALKFLMTDTVAIIGPQTSGMAHVLSHLANELHVPLLSFTALDSTLTPLQYPYFVQTAPSDQFQMTAIADMISNYGWREVIAIFSDDDPGRNGVTVLGDKLAERGCKLSYKAALPPDPTATPSFIISQLVKIKSMESRIIVLHTFAKTGLLVFDLAQKQEMMSKGYVWIATAWLSTVLDSSASNTSNSILGVLTLRPHTPQSLKKQAFISRWKHLSNGSIGLNPYGLYAYDSVWMIARALNLFFDQKGRVSFSNKNLSSTGEETLDLGALSIFDGGKQLLDNILRINMTGLTGPIHFGSDRSPPHPSFDIINVIATGFRSIGYWSNYSGLSVITPEKLQLKPANRSISNQHLKPVIWPGNTIERPRGWVFPNNGRQLRIGVPNRVSYRDIVSQINASNAVQGYCIEIFRAAIKLLPYEVQYKFVLFGDGKNNPSYYDLVNMITLDVFDVAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPILISFFIISGENTVSPLGRIVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSSERIGFQVGSFAANYLTEQLNIPKHRLVPLGSPEEYAIALERGTVAAVVDERPYVELFLSDHCEFSIRGQEFTKSGWGFAFPRDSPFAVDMSTAILTLSENGELQRIHEKWLSEKACAHRSSENEQLQLNSFKGLFLICGITCFVALLIYFLSMLHQFSKKSPIKAGPSNRDSSRSARIQTFLDFVDEKEVVSPRKLKRKLEHISSNRLRSISKSRSERVQ 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00978 878 Gene3D - 175 445 - -
Vian7g00978 878 SMART AABind_6 491 772 IPR001638 -
Vian7g00978 878 FunFam Glutamate receptor 487 599 - -
Vian7g00978 878 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 60 596 IPR015683 -
Vian7g00978 878 SUPERFAMILY Periplasmic binding protein-like I 57 484 IPR028082 -
Vian7g00978 878 Gene3D - 599 678 - -
Vian7g00978 878 CDD PBP1_GABAb_receptor_plant 61 447 IPR044440 -
Vian7g00978 878 PIRSF IGluLR_plant 25 598 IPR017103 -
Vian7g00978 878 PIRSF IGluLR_plant 596 877 IPR017103 -
Vian7g00978 878 Gene3D - 487 598 - -
Vian7g00978 878 Gene3D - 736 768 - -
Vian7g00978 878 SUPERFAMILY Periplasmic binding protein-like II 489 774 - -
Vian7g00978 878 FunFam Glutamate receptor 175 331 - -
Vian7g00978 878 Pfam Bacterial extracellular solute-binding proteins, family 3 509 770 IPR001638 -
Vian7g00978 878 FunFam Glutamate receptor 670 773 - -
Vian7g00978 878 CDD GluR_Plant 490 769 - -
Vian7g00978 878 Pfam Ligand-gated ion channel 771 799 IPR001320 GO:0015276|GO:0016020
Vian7g00978 878 Pfam Receptor family ligand binding region 78 428 IPR001828 -
Vian7g00978 878 Gene3D - 704 735 - -
Vian7g00978 878 Gene3D - 78 420 - -
Vian7g00978 878 SMART GluR_14 493 771 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00978 Vian-Chr7 18027424 18030872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00978 29 876 Ion Channels AT2G17260 56.182 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00978 K05387 - qsu:112010597 1135.55