Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00970 ATGATGGATAATGAGGTGTTAGAATTTGATATTGGGTTGGGCGGAGTAGGCGAGGGAGAATATGACGATGATGGAGGGGACATCGAACACCCAATGGATGAAGATGAATTGGGCGATAGCAGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGTAACCGCTGGAATATATCTTCCGGAGGGGGACCTCTCAGATCTGGAACCCTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCCTTCTACAATTCCTACGCCCGTCGTGTTGGGTTTAGTACACGTGTCAGCTCATCCCGTCGTTCGAGGCGCGATGGAGCTATCATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTTCGCAACTTGAATGAGAAGCGCACGAAGGATAGAGAGATCAAGCGTCCCCGAACAATTACCAGAGTCGGATGTAAGGCGTCTTTGTCTGTGAAAATGCAGGACTCTGGGAAGTGGGTGGTGTCTGGCTTTGTTAGAGAACATAATCACGAACTGGTTCCCCCGGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCGGGAGCTGCCAAGACCCTCATTGATACCTTGCAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTGATTAAAGAGTATGGTGGGATTAGCAAAGTCGGCTTCACAGAGGTCGACTGTAGGAACTACATGAGAAATAATAGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTCGATTATTTGAGACAAATGCACGCCGAAAACCCAAATTTTTTCTATGCTGTGCAAGGGGATGAGGATCAGTCCATAAACAATGTTTTCTGGGCTGATCCCAAGGCAAGGATGAATTACACATTTTTTGGTGACACTGTAACTTTTGACACTACATACCGATCTAATAGGTATCGCTTACCATTTGCTCCCTTTACTGGTGTAAATCATCATGGACAGCCTGTTCTTTTTGGTTGTGCCTTCCTAATTAATGAATCTGAAGCATCATTTGTTTGGCTTTTCAAAACATGGCTTATGGCCATGTCTGGACGTCCACCAGTGTCCATAACAACTGATCATGATTCTGTAATTCGTTCAGCCATAATACAAGTCTTCCCCGAGACCCGACACCGCTTCTGCAAGTGGCATATCTTTAAAAAATGCCAGGAGAAGTTATCCCATATTTTCCTCAAATATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAACACTGGTAGATAAATATGATCTCAGGGATCATGAATGGCTTCAAGCAATATATTCTTCTTGCAGGCATTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCACTTGAAAGTCGCAATGAGAAGGAAGTGAGAGCTGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTTGGTACACTAACATTCATGGCATCCAAAGCTGATGATGATGGGGAGGTCATTACATATAATGTAGCTAAATTTGGAGAGGAACATAAAGGGTACTATGTTAAATTTAATGTTTTGGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTCTGGCAGTCTTTAGAGTTACCAATGTGCTTACTCTCCCATCTCACTATATATTGAAACGTTGGACAAGAAATGCAAAGAGCAATGTAATATTAGAAGACCATTCTTGTGATGTATATACTTACTATTTGGAATCTCATACAGTTAGATATAACACCCTTCGACACGAGGCCTTTAAATTTGTTGATGAAGGTGCACAGTCTACTGAAACTTACGATGTTGCCATGGATGCTTTACAAGAAGCTGCAAGAAGAGTTTCTCAGGCAATGCAAAATGAGGGAAGAATTCCTATCAGCAATGGAAAATTAAGGAGTCATGTGATGAATGATGAAAGTCATGCTAATTACACAAGTGCATGCCAAGAAGAATGCTTGAGCCAACATACATCTAAGGATGATTTGGATACAAATATTAGAAAGCTTCTGAATGAACTTGAGTGTGCAAATCGGAAGTGCGAAATTTATCGGTCCAACCTGCTTTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTATCTGTTAAGGTGGAAAATATCAAAATAAGCATGAAAGATGGCATCTAA 2370 0.4215 MMDNEVLEFDIGLGGVGEGEYDDDGGDIEHPMDEDELGDSSGGGGGGGGGVTAGIYLPEGDLSDLEPCEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSINNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKYPNFEAEFHKCVNLTESIEEFESCWSTLVDKYDLRDHEWLQAIYSSCRHWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKADDDGEVITYNVAKFGEEHKGYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEDHSCDVYTYYLESHTVRYNTLRHEAFKFVDEGAQSTETYDVAMDALQEAARRVSQAMQNEGRIPISNGKLRSHVMNDESHANYTSACQEECLSQHTSKDDLDTNIRKLLNELECANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGI 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00970 789 Coils Coil 732 759 - -
Vian7g00970 789 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Vian7g00970 789 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 688 IPR031052 GO:0006355
Vian7g00970 789 Pfam MULE transposase domain 294 387 IPR018289 -
Vian7g00970 789 MobiDBLite consensus disorder prediction 20 34 - -
Vian7g00970 789 Pfam SWIM zinc finger 569 608 IPR007527 GO:0008270
Vian7g00970 789 SMART 26again6 585 612 IPR006564 GO:0008270
Vian7g00970 789 ProSiteProfiles Zinc finger SWIM-type profile. 574 610 IPR007527 GO:0008270
Vian7g00970 789 MobiDBLite consensus disorder prediction 13 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00970 Vian-Chr7 17962158 17967076 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian7g00970 MULE 3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00970 - - gmx:100793442 1432.54