Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00951 ATGAATATGCATATGCATAGATTCAGAGCAAGGGTTTTTCTGCGCTCAATTTCACTTTGTAAATCTAAGTTGCATGAACACCATGGTGCTCAAATTCACTTCTCTCAAAATCGCACCTCCACAGGTCCTGGATTTGTTGAATTTGAAACAGAACCATCTATGCAGATGCAAGTTCTTAAGGCACTCTGCTCGGGTGAAAGAAAGAAGGCTTCAGACTTACTTTTGGATTTTGGTTCCAGAACCCACTCATTAACTGCTGACGATTTTCTTCATATTTTTAAGTACTGTGCACGCTCTCCTGATCCATTGTTTGTAATGGAGATTCGGAGATTCATGGAATCAAAAGGTGTTAGCATGAACAATCAATGCTCATCTCTTATGATAGAGGCCCTTTGTAAAGGAGGTTACTTGGAAGAGGCCTTTGATGTCATTGATTTTCTTGGAGGAAGTCAATGTCTCTATCCAGTTCTCCCACTTTACAATAGACTCTTAGGATCCTGCACGAAAATGCAGAGTCTAATTCAAGCAAACAAATGTGTGGACATAATGGAAAAGATAGTAGGGAAGAGTGAAGTTACATATACCGAGCTTCTCAAGTGTACCGAACAGACAGATAATGCAAAGCTTAGAGATAATTCAAAACCCTATTCCAATTGTTGTATCATCAACCAGTCACAAAAGGACAATAAAGTGGAGGATCTTGATAAGCCTCAGTTGCCAGTATATGCCATTGTGCAAAAACATCATGTCAAAGGAGCATGGGGTCATTCACTTGTGCAGGGTGAGCTTGCAGTTTTTCTGAAAAACTTGCCTGCAGCCCATCTTCTTTGGCAGGAGTATGTGAAAAACTATAGCATGAGTATCATTCCTCTGCGAAAATTCATTTGGTCATTTACAAGGTTAAGAGATTTAGAATCTGCTCATAAAACACTACAACAAATGGTGTCATTAGTTGGCAGGGGAAACTTTTCAATCGGTAAAACAGTTTATGGGAAGTTGTATTCTACTAGAATGGACATCCCTGTGCCTTCAAATAAGGGGCTAGGCTTAACCCTATCAGACTTGAAGGAGTTAAAAAAATTGGACTCTTGTACGAGTGCTGAATTATATGCACTGAATGGAGAAGAACACTCACTACTTGTGAAGGTGTTGAGGTGGTCCTTTAATGACATAATACATGGGTGTGCAAACCAAAAGAATTATATTCTTGCAAAGAAGCTTATGTTACAGATGGAAAATCTTGGTTTGCAGCCATCCTGCCATACATATAATGGTATTATTAAAGCAGCTGTTTCTCATGGAAATGTTGGAGATGCCATAGGAGTGTTGAAAAAAATGCAGCAGAAGAATTTGAAGCCGAATGATTCAACTTTAGCAACACTTTCAATCACATGCAGTAAAGCACTACAGTTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGCTTTGCTAGCATCATGCGATGAATTGAATCAACCTGAACGTGCAGTGCAAGTGTTTGCCAAGATGAAGCAGAAAAAAGTTTTGCCTAATATCAGGACTTGTGAGCTTCTATTTTCGTTATTTGGTGTTGTAAATGCCCCTTATGAAGACAGTGATATACTGTCACAGGTGGATGCTGCTAAAAGAATAAAAGCTATAGAAAAATATATGGCCACAAATGGCATTAAGCACAGTCATCTTTCAATAAAAAACGTATTGAAAGCCCTTGGAGAAGAAGGGATGATAAGAGCGCTGATCCAGTATTTACACCTGGCAGAGAATCTTTTCATTTATCAAAACCCTTCATTGGGAACTCATATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAAGAAAGTGACATGGCAATTGCAGTTTTCAAGAAGATGAAGTTATGTGGCTGCAACCCTGACTCTGAAACATACAATATAATGATTGACTGTTGTACCATCATACAAAGTTACAGATCTGCTTGTTTGCTGATTTCAATGATGATACGGAAAGGGTTTTGTCCAGTGATTTGTACATATACCGCTATCATTAAGATTTTATTGGAAGATGACAACTTTTATGAAGCCCTGAATCTTTTGAAACAAGTCAAATTAGATGGCATCCAACCTGATGTACTGCTGTTCAATACAGTTCTTAAACAAGCTTGTTACAAGGAAAGAGTTGATGTAATTGAGTTCATTGTGGAGCTTATGCACCGAGAGAAAGTTCCCCCCGATCCAAGGACATGCGGCTATGTGTTCTCTGCATACGTAAATTCTGGTTTTCACAGCACAGCAATTGAAGCCTTGCAGGTTTTAAGTTTGCGTATGATATCTGAAGATGGCAACATACTTGGGGAGGAGAAAAAATTTGTAAATGAATTCATCCTGTCTGAAGATTTGTCTGCTGAGTCACAGATACTCAAGTTATTTGAAGATTCTGAAGATGAACTTGCAGTTGGGTTGTTGAATTTAAGATGGTGTGCCATAGCTGGATTCCCAATCTGCGAGTCAGCTGATCAAAGTCTGTGGGCGAGAAGACTGGAAGGAAAGCGATTCTGA 2568 0.3886 MNMHMHRFRARVFLRSISLCKSKLHEHHGAQIHFSQNRTSTGPGFVEFETEPSMQMQVLKALCSGERKKASDLLLDFGSRTHSLTADDFLHIFKYCARSPDPLFVMEIRRFMESKGVSMNNQCSSLMIEALCKGGYLEEAFDVIDFLGGSQCLYPVLPLYNRLLGSCTKMQSLIQANKCVDIMEKIVGKSEVTYTELLKCTEQTDNAKLRDNSKPYSNCCIINQSQKDNKVEDLDKPQLPVYAIVQKHHVKGAWGHSLVQGELAVFLKNLPAAHLLWQEYVKNYSMSIIPLRKFIWSFTRLRDLESAHKTLQQMVSLVGRGNFSIGKTVYGKLYSTRMDIPVPSNKGLGLTLSDLKELKKLDSCTSAELYALNGEEHSLLVKVLRWSFNDIIHGCANQKNYILAKKLMLQMENLGLQPSCHTYNGIIKAAVSHGNVGDAIGVLKKMQQKNLKPNDSTLATLSITCSKALQLDLAEAFLNQISECLYPHPYNALLASCDELNQPERAVQVFAKMKQKKVLPNIRTCELLFSLFGVVNAPYEDSDILSQVDAAKRIKAIEKYMATNGIKHSHLSIKNVLKALGEEGMIRALIQYLHLAENLFIYQNPSLGTHMYNTVLHYLVEAKESDMAIAVFKKMKLCGCNPDSETYNIMIDCCTIIQSYRSACLLISMMIRKGFCPVICTYTAIIKILLEDDNFYEALNLLKQVKLDGIQPDVLLFNTVLKQACYKERVDVIEFIVELMHREKVPPDPRTCGYVFSAYVNSGFHSTAIEALQVLSLRMISEDGNILGEEKKFVNEFILSEDLSAESQILKLFEDSEDELAVGLLNLRWCAIAGFPICESADQSLWARRLEGKRF 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00951 855 Pfam PPR repeat family 609 654 IPR002885 -
Vian7g00951 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Vian7g00951 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Vian7g00951 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 262 851 - -
Vian7g00951 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Vian7g00951 855 Pfam PPR repeat 125 145 IPR002885 -
Vian7g00951 855 Pfam Pentatricopeptide repeat domain 407 454 IPR002885 -
Vian7g00951 855 Pfam Pentatricopeptide repeat domain 701 761 IPR002885 -
Vian7g00951 855 Pfam Pentatricopeptide repeat domain 490 533 IPR002885 -
Vian7g00951 855 Gene3D Tetratricopeptide repeat domain 606 805 IPR011990 GO:0005515
Vian7g00951 855 Gene3D Tetratricopeptide repeat domain 57 262 IPR011990 GO:0005515
Vian7g00951 855 Gene3D Tetratricopeptide repeat domain 488 605 IPR011990 GO:0005515
Vian7g00951 855 NCBIfam pentatricopeptide repeat 421 454 IPR002885 -
Vian7g00951 855 NCBIfam pentatricopeptide repeat 611 644 IPR002885 -
Vian7g00951 855 NCBIfam pentatricopeptide repeat 646 677 IPR002885 -
Vian7g00951 855 Gene3D Tetratricopeptide repeat domain 377 487 IPR011990 GO:0005515
Vian7g00951 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00951 387 817 Glycosyltransferase AT1G05670 20.551 2.16e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00951 - - vun:114194590 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00951 7 17692149 17701021 Vian7g00951 7 17692149 17701021 ECH