Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00946 ATGGAAGAGCAGAAGCAGGAGGAAAGCCTGAAGCATTTGGGTGAAGAAGAAGAAGAAGAAGAATCGGTGTCGGAATCGGTGCGGGATTTACCCTCCGACGCCGTAAAGGAATTGTTGTCGGAAGGGGTATGCGCCCGTTGCGTCCTTCGCCTCTTCGGCCTCCAAGGCCGTGTCTATGCTTCTCCTCCTTCCCTCTCTTTTCTCTCTTCTCTCTCCGCCACCACACATCAACTTTGCACACTTTGCTTTGGGATTCTGCAGTTCACATATTATTCAGACGACACCCAAACTCTCCTTCAAAATCAGAACCTCCCACTTCTCATTGCTGACACCGTTAAACGACACGCCTATCAGTTCCATACCTTTTCCCTTGAAGTTTCTATCCCACCAATCATTCTCAACAATGATAACTCTCTTCGCTCATATATGAAAACCAAATTCGGGTCTCAATCTTGGTTCCAAGAAAACTTGCTCACTGGATGCATATCTACAAAGGATGCCTTAAAATTTTCTCTGATATATCCTCTTGAAAATCTTCTGGAATGTAAATCGAGTATGGGCAATTTCCGCATTCGTTTGACTTACACTCACACAAAAGCATCGAAGGGGGATCAGAACCGGTCAGATAGTACCGAGACTTGCAAGAGAAGAAAAATAGGAGAGTCCAATCTTGTTGGAGAAATACCTATTAGCAAATCACTTGAGAATGATTCCTCTGACGGCTGTGAATTCTTGCTAGAAAAGGCAAACGAGCCTTGCCATTTTACATTCTTTTGCTACAGGACGCCTTTCTATTTTGGTGGAAGATACCTGAAGTATTCACGGAATGTGAGTCAAACATGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCGGTTGAAGAAATAATTGGTGGAAACATCCTCCAAGCCTGCCAAGGTGATGGTTTTAAGTTTCACGCTGCAGGCAGAGAAGATATCGATGTCCGAATGTTGGGTCCAGGCAGGCCCTTTCTTGTTGAGGTGCAAAATGCACGGCATATCCCATCTGAACTGTTTGTAAAAGATGTAGAGAAAAAGATAAATAACATGGAGAATAAATTGGTTAGGGTGAAAAATCTGAAACTTGTTGGTAGTGAAGGCTGGGACCTTATGCGTGAAGGTGAAGCAGAGAAGCAGAAACAATATGCTGCTTTAGTGTGGATATCTCGTCCTCTAAAGGATGAAGATTTTCAATGTATTTCTTCACACAAGGATTTGAAAGTTTTGCAGAGGACCCCAATAAGGGTGCTACATCGTCGCAGTCCTTTAGAGCGGGAAAAGATTATTCATTGGATGAAAATAGAGGCAATTGCTGGAAGTTCCCAATATTTTCTTCTGCACCTATGTACACAGGCTGGGACCTATATCAAGGAATTTGTTCATGGAGATCTTGGACGCACCTATCCTAGCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCACAGACATAAAAATGGAATGTTTCCTGACATAA 1515 0.4297 MEEQKQEESLKHLGEEEEEEESVSESVRDLPSDAVKELLSEGVCARCVLRLFGLQGRVYASPPSLSFLSSLSATTHQLCTLCFGILQFTYYSDDTQTLLQNQNLPLLIADTVKRHAYQFHTFSLEVSIPPIILNNDNSLRSYMKTKFGSQSWFQENLLTGCISTKDALKFSLIYPLENLLECKSSMGNFRIRLTYTHTKASKGDQNRSDSTETCKRRKIGESNLVGEIPISKSLENDSSDGCEFLLEKANEPCHFTFFCYRTPFYFGGRYLKYSRNVSQTCWIIDDERMGEASVEEIIGGNILQACQGDGFKFHAAGREDIDVRMLGPGRPFLVEVQNARHIPSELFVKDVEKKINNMENKLVRVKNLKLVGSEGWDLMREGEAEKQKQYAALVWISRPLKDEDFQCISSHKDLKVLQRTPIRVLHRRSPLEREKIIHWMKIEAIAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTYPSIGSILGCRAEILQLDVTDIKMECFLT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00946 504 NCBIfam tRNA pseudouridine(54/55) synthase Pus10 262 498 - -
Vian7g00946 504 FunFam tRNA pseudouridine synthase Pus10 388 498 - -
Vian7g00946 504 FunFam tRNA pseudouridine synthase Pus10 263 387 - -
Vian7g00946 504 MobiDBLite consensus disorder prediction 1 29 - -
Vian7g00946 504 PANTHER UNCHARACTERIZED 73 501 IPR039894 -
Vian7g00946 504 Coils Coil 348 368 - -
Vian7g00946 504 Gene3D - 388 498 - -
Vian7g00946 504 Gene3D - 264 387 - -
Vian7g00946 504 SUPERFAMILY Pseudouridine synthase 380 498 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00946 K07583 - gmx:100780683 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00946 7 17649238 17654705 Vian7g00946 7 17649238 17654705 ECH