Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00929 ATGGCAATAATTGCAAATACAATTTCTACTCTCATATCCTTCAACCTCATCATCTCACTTGGGATCTTGGGCATTCAACAAGCTAGAAAAAAAAAAATGGGCCGAGTTATGTTTCTTTTGGGTAGCCTCATTGGATTATGCAGCTTCACAATCACTACCTTTGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGGGGTAGTGATGCTTCAGGCACTATGGGGGGAGCTTGTGGATATGGGAATCTGTATGCAACTGGTTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTCAATGACGGAGCTTCCTGTGGCCAGTGCTACAAAATCATATGTGATTACAAAGCAGATTCCAGATGGTGCATCAAAGGAAGATCTGTCACCATAACCGCCACAAATTTTTGCCCTCCCAATTTTGCTCTTCCTAACAATAATGGAGGCTGGTGCAACCCACCCCTCAAGCATTTTGACATGGCCCAACCTGCATGGGAAAAGATTGGTATTTACAGAGGAGGAATTGTGCCCGTCTTATTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCAGTGTGAATGGGAGGGACTACTTTGAGCTTGTGTTGGTCAGCAATGTGGGTGGGGCTGGATCCATCCAATCTGTGTCCATTAAAGGATCGAAAACTGATTGGATGGCTATGTCAAGAAACTGGGGTTCTAATTGGCAATCCAACGCATATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACTGATGGAGAAACCAGAGTTTTCCAAAATATAGTTCCAGCAAGTTGGAGTTTTGGCCAAACTTTCTCCAGCCCAGTTCAGTTCTAA 864 0.4444 MAIIANTISTLISFNLIISLGILGIQQARKKKMGRVMFLLGSLIGLCSFTITTFAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGQCYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLVSNVGGAGSIQSVSIKGSKTDWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQNIVPASWSFGQTFSSPVQF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00929 287 SMART dpbb_1 96 184 IPR007112 -
Vian7g00929 287 FunFam Expansin 194 287 - -
Vian7g00929 287 Gene3D - 194 287 IPR036749 -
Vian7g00929 287 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 204 283 IPR007117 -
Vian7g00929 287 Pfam Lytic transglycolase 96 183 IPR009009 -
Vian7g00929 287 PRINTS Expansin signature 240 261 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 169 182 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 133 143 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 152 169 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 120 131 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 269 285 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 91 105 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Vian7g00929 287 PRINTS Expansin signature 193 205 IPR002963 GO:0009664
Vian7g00929 287 SUPERFAMILY Barwin-like endoglucanases 52 212 IPR036908 -
Vian7g00929 287 PRINTS Expansin/Lol pI family signature 100 118 IPR007118 GO:0005576
Vian7g00929 287 PRINTS Expansin/Lol pI family signature 269 283 IPR007118 GO:0005576
Vian7g00929 287 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Vian7g00929 287 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Vian7g00929 287 PRINTS Expansin/Lol pI family signature 60 75 IPR007118 GO:0005576
Vian7g00929 287 PRINTS Expansin/Lol pI family signature 177 193 IPR007118 GO:0005576
Vian7g00929 287 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 79 194 IPR007112 -
Vian7g00929 287 CDD DPBB_EXPA_N 60 189 - -
Vian7g00929 287 FunFam Expansin 50 190 - -
Vian7g00929 287 PANTHER EXPANSIN-A15 49 283 IPR002963 GO:0009664
Vian7g00929 287 Pfam Expansin C-terminal domain 195 272 IPR007117 -
Vian7g00929 287 Gene3D - 48 190 IPR036908 -
Vian7g00929 287 SUPERFAMILY PHL pollen allergen 191 283 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00929 Vian-Chr7 17544687 17546072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00929 96 287 Expansin Gene Family AT1G20190 83.333 2.00e-122 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00929 - - var:108338070 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00929 7 17544687 17546072 Vian7g00929 7 17544687 17546072 ECH
Vian7g00929 7 17544687 17546072 Vian4g02418 4 40820177 40821602 PCT