Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00907 ATGTCGCTAAGCAAGTTTTTCGACTGGAACACTCTTCAAATTTCCGATTCAGAAGCAAGCCTCCGTAATGAAGCCATGGCAGATGAAATAGCACCAAATATCCAGCACCTTTTTCCCTACTCAGATGAAAGCTTTTTCCTTCCAAATGCCCTTTTTGAGTACTGCATTGACCCAAACGATGGTTTTATCTATCCTTCAGATATTCACTCTCCTTTTGATCCTTTCACTTCATTCCCTCATCATCAAATCTTCCCAACTCATGAAGATTACAATCCTCTCCCGTGCCCAAAACGCCAAAAGTTCTTCTGCGAGGAACAACCAGAGCTTCTTACCACACCAACAATACCATCCAATCATATAGATGGGTTTGCTAATTGCTACTCTTTTCAATCAGAAGAGAGACAACCACAGTTTTTTTGTATGGATGAGGAGAAAGGTAACAAGGAAAGAGTCATATCTCCACAGAGTGTAGCCGCAAGAGAAAGAAGAAGAAAGATTACAAATAAGACTCAAGAACTCAGTAAGTTGGTCCCTGGTGGAACAAAAATGAACACTGCTGAGATGCTTCATGCAGCTGCAAAATATGTTAAGTATCTTCAAGTCCAAGTTGAAATGCTTGAACTCATGAACTCGTTTGAGCATGAAGATAAAGCAGCACCTCCTTCTGAGATTCTACACGCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGTGGAAAAGTGCTTTTTGCCAAAAGAAACTGTCACCACTTTGACAAATCTTGAAGTTGTTCAATCGAGACCTACCATGGTTGAGGAACTTAAACAGCTAATTGAAACAGACCCTGAGAAAGAAAAGCAAGAATAA 855 0.4047 MSLSKFFDWNTLQISDSEASLRNEAMADEIAPNIQHLFPYSDESFFLPNALFEYCIDPNDGFIYPSDIHSPFDPFTSFPHHQIFPTHEDYNPLPCPKRQKFFCEEQPELLTTPTIPSNHIDGFANCYSFQSEERQPQFFCMDEEKGNKERVISPQSVAARERRRKITNKTQELSKLVPGGTKMNTAEMLHAAAKYVKYLQVQVEMLELMNSFEHEDKAAPPSEILHALVVSPFVQEKLYAVEKCFLPKETVTTLTNLEVVQSRPTMVEELKQLIETDPEKEKQE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00907 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Vian7g00907 284 SMART finulus 156 205 IPR011598 GO:0046983
Vian7g00907 284 Gene3D - 153 214 IPR036638 GO:0046983
Vian7g00907 284 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 153 232 IPR045843 GO:0003700|GO:0006355
Vian7g00907 284 Pfam Helix-loop-helix DNA-binding domain 160 200 IPR011598 GO:0046983
Vian7g00907 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00907 Vian-Chr7 17354915 17355954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00907 61 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 34.335 7.41e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian7g00907 HLH 6.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00907 - - pvu:PHAVU_001G006100g 399.438