Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00883 ATGTATTCAAACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCCCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAATCTATTGATGGGCATTCAAATGGGGCCCCTACATCTGGTCAAGACTCTTTTTCCAACGCTGGAGATTCCCATTCCCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGTTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTCCCATATCAGTATCCTGGCGCAGGTTTCTCTTCACTGATGACTGCTTCTGTTCTAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAGGAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCGGTGAAGGCCAAGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAGCCCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGAGAAGCAACGGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGGCAGATATCTTCATGTCCCAACAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCATACACTGCACTGGCCTTGAGTACAATATCACGCCACTTTCGGTGTTTACGTGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTTGGTGTAATGCGACAAGTTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCACTTCCTCCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAATTTGGCGATTCTGAGATGAGCAGCAATATACTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGCTCAATCTCCTGACAGCAAAAGGGAAGAGTCCCAGGACAACATAATAACAGTAGATGATAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGAATCCGAGGTAGTGATCATGGAGAAAATGGCTTGGATCCTAGAATTGGGAGACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTTCTGCTCCTGCCACATACGATTTATCTGAGTTAGGTAACATTGGTGTTGGTGGGCAGGTGTCACTAGCATTGGAATTGAGGAACTGTGATAGTGAAGGGTTTGGCGGGTCCAATGATGACATGCTTAGAAGACGTAAGAAACCATTGGCTTCTTCCTCAGAGGCTGATTTGATAGATTACCATTTCACAGACCAAGAAAAGCAACAGAGCAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA 1911 0.4474 MYSNQAFSSGPYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTMTVQSIDGHSNGAPTSGQDSFSNAGDSHSHLVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVLNLKGTSSLKDDEASLQRELRNAECMASLASSGFHRREGLLYTPQHPSMCLGEGQDGSLGFSSSVLSPQYLKAAQELLDEIVNVRKALKQTGLEKQRSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALSTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQVWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMSSNILSSENTLKAPRDDAQSPDSKREESQDNIITVDDSDIQHHGLKLDHASELDRGIRGSDHGENGLDPRIGRLQGDQRFNINNSNSSYYGEGCIIASAPATYDLSELGNIGVGGQVSLALELRNCDSEGFGGSNDDMLRRRKKPLASSSEADLIDYHFTDQEKQQSKFGNPHLLHEFVV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00883 636 MobiDBLite consensus disorder prediction 471 487 - -
Vian7g00883 636 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Vian7g00883 636 SMART prehox3 190 340 IPR006563 -
Vian7g00883 636 Coils Coil 202 222 - -
Vian7g00883 636 MobiDBLite consensus disorder prediction 230 266 - -
Vian7g00883 636 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Vian7g00883 636 Pfam Associated with HOX 197 339 IPR006563 -
Vian7g00883 636 MobiDBLite consensus disorder prediction 240 266 - -
Vian7g00883 636 MobiDBLite consensus disorder prediction 507 529 - -
Vian7g00883 636 MobiDBLite consensus disorder prediction 458 487 - -
Vian7g00883 636 SUPERFAMILY Homeodomain-like 383 447 IPR009057 -
Vian7g00883 636 MobiDBLite consensus disorder prediction 507 524 - -
Vian7g00883 636 CDD homeodomain 381 442 IPR001356 GO:0003677
Vian7g00883 636 SMART HOX_1 381 445 IPR001356 GO:0003677
Vian7g00883 636 MobiDBLite consensus disorder prediction 49 74 - -
Vian7g00883 636 Gene3D - 378 455 - -
Vian7g00883 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00883 Vian-Chr7 17133792 17136787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00883 95 453 Homeobox Transcription Factor Family AT1G19700 53.243 2.83e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian7g00883 POX 8.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00883 - - gmx:100775682 1043.49