Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00877 ATGGAAAACCATCATAAACACAAGTTAACAATGGTACGCGTTTTCTTTTTCTGCATCATCTCCACGTTCCTATTATCTATACAAGGCACCCTTACTCTCACTCCAAATGAATCAATCCAAGGCAATACGACCATGGTTTCTTCTGCTGGAACTTTTGAAGCTGGATTCTTTCAGTTTGGAAATTCACAAGATCAATACTTTTGTATATGGTACAAGAACATATCACCAAAGACTATTGTGTGGGTGGCCAACAGAGATGCCCCAGTGAAAAATTCAACAGCATTTTTCACACTAACAGAACAAGGAGTTCCTGTTATTCTTGATGCCTCAGGAAGTGTTGTGTGGACCTCCAATTCATCAAGAACCGCTAAGAAACCAGTTATGCAGCTTCTAGACTCGGGAAATCTTGTTGTGCAAGATGGAGACAGCACAAAAGACCTTTTGTGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTCGTACAAACTTTGTGACTGGTCCTTTTAGGTTTCTCACATCTTGGAGAAACGCAGAAGATCCTGGCTCTGGTGAGTTTTCATATCACATAGATGCTCATGGCTATCCTCAACTGGTTACTACAAAGGGAGAACTTTTGTTCAGTAGAGGAGGGCCATGGAACGGCAATGTTTTCAGTGGAGTTTCATGGAGAAGAACGCTTAGACTCGTAAAGTTTTCGCTTGAGAGTAACGACAAGGAAGTCATTTACCAATATAAGACCTTAGAGGCTGAAACTATTACAAGGTTAGTGATCAACCCAGCTGGTCTTGTGCAACGTTTGTTATGGTCGGGTGGCAGCCGGGGTTGGGAGATTTTATCCACTCGTCCCATGGATCAGTGTGACTATTATTCCTTTTGTGATGTGAATTCACTGTGTAATGTTACTAACTCTCCAAAAATATGTACATGTTTAGAAGGTTTTGTACCAAAGTTCTATGAGAGATGGAGTTCACTGGATTGGTCTGGTGGGTGTGTCAGAAGAGTAAATTTGAGTTGTGATGGTGATAGGTTTCGGAAGTACACTGGAATGAAGTTTCCAGACACTTCTTCTTCTTGGTATAACGACAGTTTGAGCCTCGAGAAGTGTGAGGATTTGTGTTTGAAAGACTGTTCTTGCACCGCATTTGCAAATATAAATGCCAGTGGGAGAGGGTGCTTGCTTTGGTTTGGTGACATTACTGATTTGAGTAGACACACAGACCAAGGACAAGATATTTACATGAGACTTGAAGCTTCAGAGTTAGTTTATTCCTCAGATCATGGAGGGAGTAATCAGAGCTTCAATAGCAAGAATATCGCAGGGATAATAGTAGGCATCGTTTTCTTGGTCGTGGTGCTTGGATTGGCCACATTCACATATATGAAGAGGAAGAAGCTCGCGAAGAGAGAGGTGCTAAAAATATTTCATTGGAAGTTCAAAAGGGAGAAGGAAGATGTGGAGCTATCAAAAATATTTGATTTTTCAACCATCTCTGCTGCTACCAATAACTTTTCACCCAGTAACTTATTAGGAGAAGGTGGCTTCGGGCCAGTGTACAAGGGTATACTGAAAGATGGGCAAGATATTGCAGTCAAGAGGCTTGCAAAAACTTCTGAACAAGGAGCGGAGCAGTTCAAGAATGAATTCATGTTAATGGCAAAACTTCAACATCGCAATCTTGTAAAACTTCATGGTTGTTCTATTCACCAAGAAGAAAGGCTTTTGATCTATGAATACATGCCCAACAGAAGCTTGGATTACTTCATTTTTGATTCAACGCAAAGTAAACAACTGGGTTTGACAAAGCGCCTTCAAATTATTGATGGTATAGCACGAGGGCTACTCTATCTTCACCAAGACTCTAGATTGAGAATCATCCACAGAGATCTCAAAGCCAGCAATATTCTTCTAGACAACGATATGAATCCAAAGATATCGGATTTTGGTTTGGCTAGAACATTTGGAGCAGATCAAGCTGAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTCTCCATGGACATTTCTCAATCAAATCTGATGTATTTAGCTTTGGTGTGATGGTAATGGAGATAATCAGTGGGAGAAAGAATCGTAGTTTTCATGACTCTAAGCATCAGCTTAATCTTCTTAGTCATGCATGGAGATTGTGGACTGAAGACAAGCCACTGGAGCTAATAGATGAGGTATTAGATTATCCAACCACACCATTTGAAATACTTAGATGCATTCATGTGGGTCTGTTATGTGTACAACAAACACCACAAAACAGACCAAACATGTCCTCTGTGGTTTTGATGTTGAATGGTGAAAAGGTATTGCCTGAGCCAAGTCCACCTGGGTTCTACACAGGCACAACTACTCAGTTTCCCATTCAGGCAGAATCTTCTTCGAGAAGTTGTGGAGATAGAACACAAAATGAAGTTACAGTGTCCTTGTTACAGCCACGATAG 2490 0.4088 MENHHKHKLTMVRVFFFCIISTFLLSIQGTLTLTPNESIQGNTTMVSSAGTFEAGFFQFGNSQDQYFCIWYKNISPKTIVWVANRDAPVKNSTAFFTLTEQGVPVILDASGSVVWTSNSSRTAKKPVMQLLDSGNLVVQDGDSTKDLLWESFDYPGDTFLAGMKLRTNFVTGPFRFLTSWRNAEDPGSGEFSYHIDAHGYPQLVTTKGELLFSRGGPWNGNVFSGVSWRRTLRLVKFSLESNDKEVIYQYKTLEAETITRLVINPAGLVQRLLWSGGSRGWEILSTRPMDQCDYYSFCDVNSLCNVTNSPKICTCLEGFVPKFYERWSSLDWSGGCVRRVNLSCDGDRFRKYTGMKFPDTSSSWYNDSLSLEKCEDLCLKDCSCTAFANINASGRGCLLWFGDITDLSRHTDQGQDIYMRLEASELVYSSDHGGSNQSFNSKNIAGIIVGIVFLVVVLGLATFTYMKRKKLAKREVLKIFHWKFKREKEDVELSKIFDFSTISAATNNFSPSNLLGEGGFGPVYKGILKDGQDIAVKRLAKTSEQGAEQFKNEFMLMAKLQHRNLVKLHGCSIHQEERLLIYEYMPNRSLDYFIFDSTQSKQLGLTKRLQIIDGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARTFGADQAEANTNRVMGTYGYMPPEYALHGHFSIKSDVFSFGVMVMEIISGRKNRSFHDSKHQLNLLSHAWRLWTEDKPLELIDEVLDYPTTPFEILRCIHVGLLCVQQTPQNRPNMSSVVLMLNGEKVLPEPSPPGFYTGTTTQFPIQAESSSRSCGDRTQNEVTVSLLQPR 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00877 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 152 - -
Vian7g00877 829 PIRSF SRK 3 829 IPR024171 GO:0004674
Vian7g00877 829 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00877 829 CDD PAN_AP_plant 340 421 - -
Vian7g00877 829 CDD STKc_IRAK 515 782 - -
Vian7g00877 829 Gene3D - 27 152 IPR036426 -
Vian7g00877 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 788 - -
Vian7g00877 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Vian7g00877 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 771 - -
Vian7g00877 829 Gene3D Phosphorylase Kinase; domain 1 470 584 - -
Vian7g00877 829 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Vian7g00877 829 CDD B_lectin 36 155 IPR001480 -
Vian7g00877 829 MobiDBLite consensus disorder prediction 807 829 - -
Vian7g00877 829 SMART blect_4 36 155 IPR001480 -
Vian7g00877 829 Pfam PAN-like domain 344 407 IPR003609 -
Vian7g00877 829 SMART ntp_6 344 421 IPR003609 -
Vian7g00877 829 ProSiteProfiles PAN/Apple domain profile. 344 422 IPR003609 -
Vian7g00877 829 SUPERFAMILY Protein kinase-like (PK-like) 494 798 IPR011009 -
Vian7g00877 829 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Vian7g00877 829 Pfam Protein tyrosine and serine/threonine kinase 513 777 IPR001245 GO:0004672|GO:0006468
Vian7g00877 829 SMART serkin_6 509 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00877 829 Pfam D-mannose binding lectin 78 181 IPR001480 -
Vian7g00877 829 CDD TM_EGFR-like 444 473 - -
Vian7g00877 829 Gene3D Transferase(Phosphotransferase) domain 1 585 786 - -
Vian7g00877 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 186 IPR036426 -
Vian7g00877 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00877 Vian-Chr7 17067979 17071419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00877 437 794 Receptor kinase-like Gene Family AT4G23230 51.944 3.78e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian7g00877 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00877 - - var:108337036 1683.31