Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00786 ATGGGAAGAGCGCCACCTGAGTTTCCTTGCCTAACAGATATGGACCCAGACAGAATCAGTTACTTACCGGGTCATGTAATAGACCAAATTTTGTCACATTTGTCAATTAAGGAAGCAGTGAAAACAAGTGTTTTATCTAGCAAATGGAGGTACAAATGGGCCACGCTACCGAATCTTGTGTTTGATAACCAATTTGTCTCTGCGGCTGTTCAGGACCATATGATTGTAAAGAACAAGCTTTTGAGAACTGTTGATCATGTACTGCTACTTCATTCTGGGCCAATCAACAAGTTCAAACTCTCCCATCGTGATCTCCTTGGTGTGACTGATATTGATCGTTGGACGCTTCATGTATCCAGAAAGGCTGTTAAAGAGTTTGTGCTGGAAATCTGGAAAGGACAGCGGTATAAGATACACTCGTGTTTATATTGTTGTCAAAGTTTGACTCATTTAGAATTGTTTAATTGTTGGCTTAAACCTCCATCTACATTTAAAGGCTTCAAGAACTTAACGAGTCTTGATCTGCAACATGTTACCTTGGCTCAGGATGCTTTTGAAAACTTGATATCCAGCTGCCCAGTGCTTGAACGGCTGACATTGATGAACTTTGATGGTTTCACTCATCTTAATATTGATACACCGAATCTCCTGTTTTTTGACATTGGGGGTAAATTCGAAGATATTAGCTTTGAGAATACTTTCCAATTAGCTGTGGTATCAATTGGTTTGTATGTGAACTTTGAAATCAATCAAAGTAGACTTCGTGGAGGCTATAGCAATTTGCTCAAATTTTTTGTTAATCTGCCGCACCTGCAAAGGCTAGAGATTCAGAGCTATTTTTTAAAGTATTTGGCAGCGGGGATTGTGCCAATAAATCTTCCAAGACCGTGCATTGATCTAAGTTATCTTTCTATACGAATAAACTTAAATGATTTGAAGGAAATCTCAGCTGCTCTTTGCCTCCTAAGAAGCTCCCCTAATCTACAAGAACTAGAAATATTGGCTCGACAGGAGGAGCAGACTCTTACGATAACGCACAACTATTGTTGGGAAGATGTGTTTTTTTCTTGTCCAGAGATGCATATGAGAAATGTGAAGATAGATGGCATATCTGGAATCAAACCTGAATTGGATTTTATCAGCTTTCTACTTCTACACTGTCCTGTGTTGGAAAGGATGACTGTGATTCCTGTTTCAAACATGGGAACAGAACTGATGAAACAACTGTTGCGGTGTAGGAGAGCCTCAAGACAAGCTGAAATCATTTACCTCGACCCTTAG 1281 0.3966 MGRAPPEFPCLTDMDPDRISYLPGHVIDQILSHLSIKEAVKTSVLSSKWRYKWATLPNLVFDNQFVSAAVQDHMIVKNKLLRTVDHVLLLHSGPINKFKLSHRDLLGVTDIDRWTLHVSRKAVKEFVLEIWKGQRYKIHSCLYCCQSLTHLELFNCWLKPPSTFKGFKNLTSLDLQHVTLAQDAFENLISSCPVLERLTLMNFDGFTHLNIDTPNLLFFDIGGKFEDISFENTFQLAVVSIGLYVNFEINQSRLRGGYSNLLKFFVNLPHLQRLEIQSYFLKYLAAGIVPINLPRPCIDLSYLSIRINLNDLKEISAALCLLRSSPNLQELEILARQEEQTLTITHNYCWEDVFFSCPEMHMRNVKIDGISGIKPELDFISFLLLHCPVLERMTVIPVSNMGTELMKQLLRCRRASRQAEIIYLDP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00786 426 SUPERFAMILY RNI-like 138 333 - -
Vian7g00786 426 SUPERFAMILY F-box domain 15 61 IPR036047 GO:0005515
Vian7g00786 426 ProSiteProfiles F-box domain profile. 16 68 IPR001810 GO:0005515
Vian7g00786 426 Pfam FBD 356 395 IPR006566 -
Vian7g00786 426 Gene3D Ribonuclease Inhibitor 95 426 IPR032675 -
Vian7g00786 426 PANTHER F-BOX PROTEIN-LIKE 17 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00786 Vian-Chr7 16140668 16143127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00786 17 216 EF-hand Containing Proteins AT5G41840 26.577 2.66e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00786 - - gmx:100782183 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00786 7 16140668 16143127 Vian7g00786 7 16140668 16143127 ECH