LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian7g00643	ATGACAATGTTCTTCCACGAAGAAGCCCAACCGGTTCTCGAAATCATGTTCACGCCGACCGAAATAGAGGAGCTATTCTCCCTCGTTAACGAACCGCTCAGCCCGGAGTCCGGTTCTCAGGAATTGAACCGGGTGGTCCGGTCCACGCACGAGAGAAAGCTCCGGCGAATGCAGTCGAACCGGGATTCAGCCCGGCGGTCCCGGTGGAGAAAGAAGCGGCATTTAGAGAACCTCACGAACCAAGCGAACCGGCTCAGAATGGAAAACCGAGAACTAAAAAACCGGTTATGCTTAACCATGCACCAGAATCTTCTTCTCTCCTTGGAGAATGAACGTCTTAGATCCGAATCCGTGACCCTTATGGCTACACTCTCAAATCTTTATCAAATTTTAGCCACCATGATTTCACAACAGTAG	417	0.5036	MTMFFHEEAQPVLEIMFTPTEIEELFSLVNEPLSPESGSQELNRVVRSTHERKLRRMQSNRDSARRSRWRKKRHLENLTNQANRLRMENRELKNRLCLTMHQNLLLSLENERLRSESVTLMATLSNLYQILATMISQQ	138

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian7g00643	138	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	55	70	IPR004827	GO:0003700\|GO:0006355
	Vian7g00643	138	MobiDBLite	consensus disorder prediction	45	64	-	-
	Vian7g00643	138	MobiDBLite	consensus disorder prediction	33	69	-	-
	Vian7g00643	138	Coils	Coil	75	95	-	-
	Vian7g00643	138	FunFam	BZIP transcription factor	50	101	-	-
	Vian7g00643	138	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	50	96	IPR004827	GO:0003700\|GO:0006355
	Vian7g00643	138	Pfam	bZIP transcription factor	52	96	IPR004827	GO:0003700\|GO:0006355
	Vian7g00643	138	Coils	Coil	47	67	-	-
	Vian7g00643	138	Gene3D	-	50	102	-	-
	Vian7g00643	138	PANTHER	BZIP TRANSCRIPTION FACTOR 44	33	134	-	-
	Vian7g00643	138	SMART	brlzneu	48	112	IPR004827	GO:0003700\|GO:0006355
	Vian7g00643	138	SUPERFAMILY	Leucine zipper domain	52	104	IPR046347	GO:0003700\|GO:0006355
	Vian7g00643	138	CDD	bZIP_plant_GBF1	53	102	IPR045314	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian7g00643	Vian-Chr7	14515221	14515637	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian7g00643	11	131	bZIP Transcription Factor Family	AT3G49760	36.641	4.14e-19	76.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vian7g00643		bZIP_1	1.1e-07	CL0018