Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00625 ATGAGTTTTGATGAAACACCAAACACAGGACTTGGTCTTGGCCTTGGTCTTGGTCTTGTTACCTTCCATGATCAATCAGATAACTGCATGAAGAGTGATGCCCACAACATCAGAAGGGTGGAGAATCCATCAGACTGTAACAAGACATACCCTTCACTTACTTTAGGACCACCAGAAGATGATGATCATGATGAAGTGAAAAATGATCGACCAAGTTCAAAGACAGAGTCCTATGAATATTTTCGGGCACAGGTTTCTTCTCCCAGTGTGGTTTCTTCATTTTCCAACTCCTCTAGCATCAAGAGGGAGCGAGATCAGGCCACCGGAGAAGAATTTGATGTAGACCTAGAGAACGTTCAAACAAGGGTAGCAGATGCTGACGAAGATGGTAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCAGCAATCTTGGAAGAAACCTTCAGAGAACATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAATCTGCGAACCAGACAAGTAGAAGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAGCTAAAACAAACTGAGTCAGATTGTGATCTATTGAAGAAGTGTTGTGACAGTCTGACAGAAGAAAACAAGAGGTTGCAAAAGGAGGTTGAAGAACTAAAGTCAATGCAAGCAATTTCAGTGCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCCTATGCCCTTCTTGTGAGAGAATTTGTGATAGTAAAAGTGATGATGAAAATACCAACAACAATACTTCTTCATTGCTTTTTCCTTCAAAAACACATCATAATCACTTTTACAAAAGTAACTATCCTTTCTCCCACTCTTCGTCTGCAGCATGCTAA 873 0.4135 MSFDETPNTGLGLGLGLGLVTFHDQSDNCMKSDAHNIRRVENPSDCNKTYPSLTLGPPEDDDHDEVKNDRPSSKTESYEYFRAQVSSPSVVSSFSNSSSIKRERDQATGEEFDVDLENVQTRVADADEDGNPRKKLRLTKEQSAILEETFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCDLLKKCCDSLTEENKRLQKEVEELKSMQAISVPLYMQIPAATLSLCPSCERICDSKSDDENTNNNTSSLLFPSKTHHNHFYKSNYPFSHSSSAAC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00625 290 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Vian7g00625 290 Gene3D - 126 195 - -
Vian7g00625 290 CDD homeodomain 132 190 IPR001356 GO:0003677
Vian7g00625 290 MobiDBLite consensus disorder prediction 57 76 - -
Vian7g00625 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 263 - -
Vian7g00625 290 FunFam Homeobox-leucine zipper protein 18 117 194 - -
Vian7g00625 290 SMART HOX_1 131 193 IPR001356 GO:0003677
Vian7g00625 290 Pfam Homeobox associated leucine zipper 189 222 IPR003106 GO:0006355|GO:0043565
Vian7g00625 290 Coils Coil 188 225 - -
Vian7g00625 290 SMART halz 189 233 IPR003106 GO:0006355|GO:0043565
Vian7g00625 290 SUPERFAMILY Homeodomain-like 130 197 IPR009057 -
Vian7g00625 290 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Vian7g00625 290 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Vian7g00625 290 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00625 Vian-Chr7 14227718 14229382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00625 1 288 Homeobox Transcription Factor Family AT4G37790 42.949 8.88e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian7g00625 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00625 K09338 - gmx:100807072 425.631