Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00604 ATGGCTCAGCTTGTTCTGGTGCGTGATAAGCATGGAGCTATTTCCATTTTCTTCAAGGGAGCTATTGAAGAAGTATCAAGTGCCTCTTTTTACATTTCCCAGATGGAGAATAATATGTACAGTGCTTCACTGGACATTGCTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTTCTTGCTGCAGAACAAGGTGAACCTAGAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCCAGCTAGAATTGCTGATTCCAATTCATTTGTCTCAATACAAGGAAAGAGTATTGTAGGAGATGCCTCAAATCCCATTAACAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGCTGCTTCACTTGCTGATAGAATAGGCCTTCAAGAAAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTTCATTGGAGGCACTGGGACCATACATCTTCAATAATTGGCAAGATACATCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAAGTATTCAGAAGTGGAATGTGAACAAGTTTCTGAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAATGTTGCAAGCTTGGGAAATTTTGCCTATAATTCCTCTAATTGCAGTAAAGAACTGTCACTAAGTCTTTCAAGATCTCCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGCAGCATGAATGGAAGAAGTTCAGGCTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTGTATGAGATTAGGTTCCAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTGCTCAAATTGCCACATACTCATTTGAAAACGTAGAGCTGATGAATTACCCAGCTTCTGGTGTTAGAGCAGGAGGAAATAAGTCAGCTTCAGCTTTCATACCAAAGAGAAGGGTAGCGAGTAATCAGAATGAAAATTCCATGTATGGAGCACATGCAGAAGAGTCTCCATCGGAAAGACATGCAGCTGATTCAAACAAATCCCAACTTCTCATGCTTCTACAACTGGTGGAGAATGGATATAGCCAGTGTTTGGATGAGGTTCATACTGTGGCATCTGCGTTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTGTACAAGGACTTGAGAGAGAGGATTAGCAACTGTATTCGTGCAATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAAAAAAGATCAGTTATGGAGACCCCAAAGGGGATTGCCAGAGAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTCATTGGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGATTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCACTCACAGAAGCAGGATGAGCATGAACAGTCAAATGTTGAATATCAATTGA 1815 0.4215 MAQLVLVRDKHGAISIFFKGAIEEVSSASFYISQMENNMYSASLDIAGRNSAVIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGEPRSDVHVDGCFINPARIADSNSFVSIQGKSIVGDASNPINNSAIQEHLAGGRPIASAASLADRIGLQENLQSSAALPHSMSSLEALGPYIFNNWQDTSNPLAATFGDHAYDELSSIQKWNVNKFLKAPEANGTEIQAYSSIGNLVQNGWTSSNVASLGNFAYNSSNCSKELSLSLSRSPPTTGQCSEMSCSNASRSMNGRSSGLEQPSCSSKELCMRLGSNKHVQFSPAILGSRYLAGVQEIFAQIATYSFENVELMNYPASGVRAGGNKSASAFIPKRRVASNQNENSMYGAHAEESPSERHAADSNKSQLLMLLQLVENGYSQCLDEVHTVASAFHAATELDPHMHAHFALQTISLLYKDLRERISNCIRAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKKKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESTHRSRMSMNSQMLNIN 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00604 604 ProSiteProfiles 'Homeobox' domain profile. 502 565 IPR001356 GO:0003677
Vian7g00604 604 Pfam Homeobox KN domain 522 561 IPR008422 GO:0003677|GO:0006355
Vian7g00604 604 SUPERFAMILY Homeodomain-like 507 574 IPR009057 -
Vian7g00604 604 CDD homeodomain 505 566 IPR001356 GO:0003677
Vian7g00604 604 SMART HOX_1 505 569 IPR001356 GO:0003677
Vian7g00604 604 Gene3D - 508 587 - -
Vian7g00604 604 MobiDBLite consensus disorder prediction 271 298 - -
Vian7g00604 604 SMART prehox3 317 462 IPR006563 -
Vian7g00604 604 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 269 596 - -
Vian7g00604 604 Pfam Associated with HOX 323 461 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00604 Vian-Chr7 13948514 13951290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00604 222 578 Homeobox Transcription Factor Family AT4G32980 49.454 4.94e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian7g00604 POX 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00604 - - gmx:100812648 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00604 7 13948514 13951290 Vian7g00604 7 13948514 13951290 ECH
Vian7g00604 7 13948514 13951290 Vian4g02137 4 38213483 38215623 PCT