Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00592 ATGACTCCTTATTCCCTCCACCCACCACCTCCTTCCTTACAACCTCAAACCCAAATCTTCATTTCTTCTAATAATCAGGATTGCCCTACCTTCTTCAACATCTTTGATCCAAGGAAAACCATACAAATTGGAGGCTTCACACAAAGTTATCAACAGGATGAGAAGATGGTAATATTGCACGATGGATCATCAAGCAATAATCTGAATTCACCTGAGCCAGTTACGGTTGATCCAATTAGCAGCAGAAATGAGGGTAATTTAGGGTCGTACAAAATGGACGAAGAAGACATAAAACACAGTGATGGGTCTGAGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAGATGATGAGAAGGAGCATGAGTCCAACCTCTGACAGATTGAATCCACAAGGGCAAGAAAGCAGATACAGCCAAAGAAGCCCTCGTAACACCAGCAGTAGCACCACTAGGGTTTGTTCGGACTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCAAATGGTTTGGTTACTCCCATAAACTCAGTATGTGCAAAGACCAGAGTGTACAACAAGGAGAAAAAGTCTCGTGCAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCACTACTACTACTACTACTGCTGCTTCTGCAGGCTCATCTGAAGGGCTGAGAAAGATTGAATATTTCAAGGATTTTGCCATAAGTTTGAGCAGTAAAAACTCATCTTTCCAACAGAAAGTTTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTGATGGAGTTATCCTGTGGTTTTGTCCACTGA 882 0.4308 MTPYSLHPPPPSLQPQTQIFISSNNQDCPTFFNIFDPRKTIQIGGFTQSYQQDEKMVILHDGSSSNNLNSPEPVTVDPISSRNEGNLGSYKMDEEDIKHSDGSEKWMSSKMRLMKKMMRRSMSPTSDRLNPQGQESRYSQRSPRNTSSSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASNGLVTPINSVCAKTRVYNKEKKSRANHFAQFKNKYKSTTTTTTAASAGSSEGLRKIEYFKDFAISLSSKNSSFQQKVFPRDEVAEAAMLLMELSCGFVH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00592 293 Gene3D - 147 194 IPR013088 GO:0006355|GO:0008270
Vian7g00592 293 ProSiteProfiles GATA-type zinc finger domain profile. 148 184 IPR000679 GO:0006355|GO:0043565
Vian7g00592 293 MobiDBLite consensus disorder prediction 123 167 - -
Vian7g00592 293 ProSitePatterns GATA-type zinc finger domain. 154 179 IPR000679 GO:0006355|GO:0043565
Vian7g00592 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 188 - -
Vian7g00592 293 CDD ZnF_GATA 153 190 IPR000679 GO:0006355|GO:0043565
Vian7g00592 293 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 27 293 - -
Vian7g00592 293 SMART GATA_3 148 199 IPR000679 GO:0006355|GO:0043565
Vian7g00592 293 MobiDBLite consensus disorder prediction 88 103 - -
Vian7g00592 293 MobiDBLite consensus disorder prediction 119 171 - -
Vian7g00592 293 MobiDBLite consensus disorder prediction 62 103 - -
Vian7g00592 293 Pfam GATA zinc finger 154 187 IPR000679 GO:0006355|GO:0043565
Vian7g00592 293 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00592 Vian-Chr7 13790178 13791901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00592 103 293 C2C2-Gata Transcription Factor Family AT4G26150 37.054 1.13e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian7g00592 GATA 2.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00592 - - vra:106764137 494.582