Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00582 ATGTCTAATTTGACTTCTGCATCGAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAATGGTTTTTTCCATGCTCACCAATACTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTTCCAGGCCATCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCAGAGACCCTATTGGCAACAAACAGGTTTGTGTGTGAGATTTGTCAGAAAGGGTTTCAAAGGGATCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCAACATGTGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGGGAATACAAATGTGACTGTGGTACCCTTTTCTCTAGAAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAAGAAAGTGGAAGAGCAGTGAACCCTCACTCTCTATTATCATCTCAGTCCCAATTTCGAAGCCATGGGCTTCAACTTGAAGCAGCATCATCACTGGTGATGAAAAGAGAACAAGATTTCAACCTATTAGGTCAAGAAATTCCATCATGGTTATCTTCTCCAACAGTGTTGGAAGAATCAATGCACAGTCAAACACTGAGAACCACCTTAGACTTCTCAACACCACAGTTGTTTCCCACACATGCGAACCACTCATTGTTCCACCATGATCAAAACCCTAGCCCTACTACTACTTCTACAACAACAGCTTCAACACCCACTTTTCTTCCTTCTTTGAGTTCCTTCCATTATTCCACCACTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATTGGCGTAACAGTGAGTGCAGCAACTTCACAAGCGATGATAGTGAGACCCCACTTGTTTCTGCAGCAGGTTCACGTGCCTGAATGTACAACAACAACTCCTACTACAACAGGGTATAATAATATGGCTTCATCTTCACCCGTTTCTGGAATGCTTATGGCTATACCTTCACGTGAACAAATAGGGACTCATGGATTTGCTCGTGGCTTGGCATCTTGA 1218 0.4376 MSNLTSASSEISASSGIRNDNGFFHAHQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPETLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSQSQFRSHGLQLEAASSLVMKREQDFNLLGQEIPSWLSSPTVLEESMHSQTLRTTLDFSTPQLFPTHANHSLFHHDQNPSPTTTSTTTASTPTFLPSLSSFHYSTTSPHMSATALLQKASQIGVTVSAATSQAMIVRPHLFLQQVHVPECTTTTPTTTGYNNMASSSPVSGMLMAIPSREQIGTHGFARGLAS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00582 405 FunFam protein indeterminate-domain 12-like 49 117 - -
Vian7g00582 405 Gene3D Classic Zinc Finger 124 202 - -
Vian7g00582 405 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 354 IPR031140 -
Vian7g00582 405 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vian7g00582 405 MobiDBLite consensus disorder prediction 281 303 - -
Vian7g00582 405 MobiDBLite consensus disorder prediction 31 54 - -
Vian7g00582 405 Gene3D Classic Zinc Finger 51 120 - -
Vian7g00582 405 SMART c2h2final6 70 92 IPR013087 -
Vian7g00582 405 SMART c2h2final6 111 141 IPR013087 -
Vian7g00582 405 SMART c2h2final6 146 166 IPR013087 -
Vian7g00582 405 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Vian7g00582 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vian7g00582 405 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00582 Vian-Chr7 13647162 13650182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00582 31 342 IDZ Gene Family AT3G50700 54.192 2.17e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian7g00582 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00582 K25870 - gmx:100783557 572.778