LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian7g00577	ATGGAGGGAGTTGTGGTGAAGGAGGAAGAAACAGTGACAGGTGGTGGTGGTGGTTCATCATCATCATCATCTTCTTCTTTGAGCTTTACTCCACAACCAATGGAAGGGTTGAACGAAGTGGGTACCCCACCCTTTTTGACAAAGATCTATGACATGGTCGAAGATCATTCCACAGATTCTGTTGTGTCATGGAGCACTTCTTGCAATAGCTTTGTTGTGTGGGATTCTCACAAGTTTTCTACTAACATTCTTCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGCTTTAGGAAAGTTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTTTTGGCAGGACAGAGGCACTTATTGAAGGGCATAAAGAGAAGAAGAAGAGTGTCACAGAGCATGCAAGAAAGAGGAGTAGGAGGAGCATGTGTTGAAGTGGGAGAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGAGATAGGAACATTCTGATGGCAGAAATTGTGAGGTTGAGGCACCAACAGCTGAACTCAAGAGACCAATTGAGTGCCATGGAAACCAGATTGCAAGCCACAGAGAAGAAACAGCAAAAGATGACCATATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGTCCACAAGACCCCCCAAAGTAGAGAAATCTTGGATGCTGAAATCAATGGGAAAAGGAGACTAATTGCTGGCCAGAGTTTGGAGAACCTGCAACAAGATGATCCTGTAACATTGATGGACTATTCAAAACAACAAGATTTGGCAACTATGGAGCCTGAGATGAACACTTTTTTCTCACCAGCTTTTGATAGTGAACTTGGTCATGAAATCATAGAGTCTGCACTAGATTCTGATATAACAGCTAGTCAGACTTATTTTGGAGACACAATATTGGAGGACTTGCTCATTGAAGACTTGGTCACTGGGGATCCAAAGGAAGAAGTTATCATTGGTGATTGTTCCCAGATTGATGTTCCAGTGGAGGATTTGGTAGCAGACCCTGATGATTGGAATCATATGGACCATTCAGGATCAAAACCATAG	1095	0.4265	MEGVVVKEEETVTGGGGGSSSSSSSSLSFTPQPMEGLNEVGTPPFLTKIYDMVEDHSTDSVVSWSTSCNSFVVWDSHKFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKGIKRRRRVSQSMQERGVGGACVEVGEFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMETRLQATEKKQQKMTIFLAKALKNPSFMQQLVHKTPQSREILDAEINGKRRLIAGQSLENLQQDDPVTLMDYSKQQDLATMEPEMNTFFSPAFDSELGHEIIESALDSDITASQTYFGDTILEDLLIEDLVTGDPKEEVIIGDCSQIDVPVEDLVADPDDWNHMDHSGSKP	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian7g00577	364	FunFam	Heat shock transcription factor 1	38	135	-	-
	Vian7g00577	364	Coils	Coil	162	182	-	-
	Vian7g00577	364	MobiDBLite	consensus disorder prediction	1	33	-	-
	Vian7g00577	364	SUPERFAMILY	"Winged helix" DNA-binding domain	42	134	IPR036390	-
	Vian7g00577	364	ProSitePatterns	HSF-type DNA-binding domain signature.	84	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian7g00577	364	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	31	268	IPR027725	-
	Vian7g00577	364	MobiDBLite	consensus disorder prediction	14	33	-	-
	Vian7g00577	364	PRINTS	Heat shock factor (HSF) domain signature	96	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian7g00577	364	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian7g00577	364	PRINTS	Heat shock factor (HSF) domain signature	45	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian7g00577	364	Pfam	HSF-type DNA-binding	45	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian7g00577	364	Gene3D	-	38	135	IPR036388	-
	Vian7g00577	364	SMART	hsfneu3	41	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian7g00577	Vian-Chr7	13566816	13569027	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian7g00577	31	358	HSF	AT2G26150	51.051	1.45e-111	327

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vian7g00577		HSF_DNA-bind	6.9e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian7g00577	K09419		-	gmx:100778558	467.233