Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00563 ATGGCATTTCGATTTGGGGTCCTCATTTTGCCTTTGCTATTTTGTTTGAGTGTTAACTCTGTGCAATCTGATGATGGATCAACGATGTTGGAGATAAAGAAGTCATTCAGGGATGTGGACAACGTTCTATACGATTGGACAGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATAACATGCGACAATGTCACATTTAATGTTGTTGCACTCAATCTTTCTGGATTGAATCTTGATGGGGAAATTTCACCTGCAATAGGGAAGCTTCAGAGCTTGGTCTCTATTGACCTGAGAGAAAACAGGTTATCGGGGCAGATGCCAGATGAGATTGGTGACTGTTCTTCATTGAAGAACTTGGACTTGTCATTTAATGAAATTAGAGGGGATATCCCGTTTTCTATTTCTAAGTTGAAACAACTAGAGAATCTGATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTCTAGACCTGGCTCAAAATAATCTTAGTGGGGAAATACCAAGGCTTATATACTGGAACGAAGTTTTGCAGTATATGGGCTTGAGAGGGAACAATTTGATTGGTTCACTATCACCAGATATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCGGAAAACATTGGCAATTGTACTACCTTCCAGGTTTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAATAGCCACTTTGTCATTGCAAGGCAATAAACTCTCTGGACATATTCCATCGGTGATTGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGAGTTGTAACATGTTAAGTGGACCAATTCCTCCTATCTTGGGAAATCTGACCTACACAGAAAAACTATACTTGCATGGAAACAAGCTGACTGGCTTCATTCCTCCGGAGCTTGGAAATATGACAAAACTTCACTATTTAGAACTGAATGACAATCATTTAAGTGGACATATTCCCCCTGAGCTTGGAAAACTTACTGATTTGTTTGACTTAAATGTTGCTAATAACAATCTCGAAGGAACAATTCCTAGTAATATTAGCTCCTGCAAAAATCTCAACAGCCTCAATGTGCATGGAAACAAGTTGAATGGAACAATTCCCCCTGCTTTGCAAAGCTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTTCAGGGTGCAATTCCAATTGAACTGTCACGGATTGGTAATTTGGATACGTTGGATATTTCAAACAATCATTTAGTTGGATCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTAAGCAGAAACAATTTGACAGGAGTTATTCCAGCAGAATTTGGAAATCTTAGAAGTGTCATGGAAATTGATCTTTCAAATAATGAACTCTCTGGCCTTATTCCTGAAGAACTTAGCCAGCTTCAGAACATGCTATCATTGAGACTTGAAAACAACAAATTAACTGGTGATGTTGCATCACTTTCGAATTGCCTTACTCTCTCTGTGCTTAATGTGTCCTATAACAAACTATTTGGTGTTATCCCCACTAGTAACAACTTTACCAGGTTTCCCCCTGATAGTTTCATCGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGCCATGGTTCTCGACCTGCAGAGCGAGTTACATTATCTAAGGCAGCCATTCTTGGAATTACTCTCGGTGCCCTTGTGATTCTTCTAATGGTATTGCTGGCAGCTTGCCGACCACACAGTCCTCCTTTTCATGATGGATCACTTGACAAACCAGTTAATTACTCGCCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAACTTGAGTGAGAAGTATATAATTGGATATGGTGCGTCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCTATCAAGAGGATCTATTCTCACTATCCCCAATGCATTAAAGAATTTGAAACTGAACTTGAGACTGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCCCCTTATGGCCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTGTGGGATCTTCTTCATGGACCTACTAAGAAGAAAAAGCTTGACTGGGATCTGCGTCTAAAAATAGCACTTGGAGCAGCACAAGGGCTTGCATATCTACACCATGATTGCAGTCCTAGAATAATCCACAGGGATGTGAAATCATCCAACATTTTATTGGACGCAGACTTTGAGCCCCATCTCACTGATTTTGGCATTGCCAAAAGCCTCTGCCCCACAAAGTCTCATACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACTTCCCGTCTTACTGAGAAGTCTGATGTGTACAGTTACGGCATCGTTTTACTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCACCATCTGATTTTGTCCAAGGCAGCAACCAATGCTGTAATGGAAACAGTTGATCAAGACATTACTGCCACATGCAAAGACCTTGGAGCTGTGAAGAAGGTGTACCAGCTCGCTCTATTATGCACAAAGAGGCAGCCAGCTGACAGACCTACAATGCACGAAGTGACAAGAGTACTTGGGAGCCTTGTGCCATCAAACACTCCTCCAAAACAACCAGCTGCACCACCTCCTGCTCCAAACCCATCTGCCAAAGTGCCATGCTACATGGACGAGTATGCAAACCTCAAGACTCCACACTTGGTGAACTGCCCCTCAATGAGCACCTCAGATGCACAGCTCTTCCTCAAGTTTGGAGAAGTAATCTCTCAGAACAGTGAGTGA 2940 0.4163 MAFRFGVLILPLLFCLSVNSVQSDDGSTMLEIKKSFRDVDNVLYDWTDSPSSDYCAWRGITCDNVTFNVVALNLSGLNLDGEISPAIGKLQSLVSIDLRENRLSGQMPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYMGLRGNNLIGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGTIPSNISSCKNLNSLNVHGNKLNGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNHLVGSIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNELSGLIPEELSQLQNMLSLRLENNKLTGDVASLSNCLTLSVLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCHGSRPAERVTLSKAAILGITLGALVILLMVLLAACRPHSPPFHDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHYPQCIKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKAATNAVMETVDQDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSNTPPKQPAAPPPAPNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00563 979 SMART serkin_6 646 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00563 979 Gene3D Phosphorylase Kinase; domain 1 619 721 - -
Vian7g00563 979 SUPERFAMILY Protein kinase-like (PK-like) 623 912 IPR011009 -
Vian7g00563 979 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Vian7g00563 979 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Vian7g00563 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 617 721 - -
Vian7g00563 979 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Vian7g00563 979 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Vian7g00563 979 Pfam Leucine rich repeat 359 414 IPR001611 GO:0005515
Vian7g00563 979 CDD STKc_IRAK 652 915 - -
Vian7g00563 979 Gene3D Ribonuclease Inhibitor 259 343 IPR032675 -
Vian7g00563 979 Gene3D Ribonuclease Inhibitor 442 568 IPR032675 -
Vian7g00563 979 Gene3D Ribonuclease Inhibitor 344 441 IPR032675 -
Vian7g00563 979 SUPERFAMILY RNI-like 203 535 - -
Vian7g00563 979 MobiDBLite consensus disorder prediction 915 935 - -
Vian7g00563 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 161 913 - -
Vian7g00563 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 569 - -
Vian7g00563 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Vian7g00563 979 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Vian7g00563 979 Gene3D Transferase(Phosphotransferase) domain 1 722 923 - -
Vian7g00563 979 ProSiteProfiles Protein kinase domain profile. 646 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00563 979 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Vian7g00563 979 Pfam Protein kinase domain 649 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00563 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 722 923 - -
Vian7g00563 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Vian7g00563 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Vian7g00563 979 Gene3D Ribonuclease Inhibitor 188 258 IPR032675 -
Vian7g00563 979 SMART LRR_typ_2 401 425 IPR003591 -
Vian7g00563 979 SMART LRR_typ_2 449 472 IPR003591 -
Vian7g00563 979 SMART LRR_typ_2 210 234 IPR003591 -
Vian7g00563 979 SMART LRR_typ_2 90 114 IPR003591 -
Vian7g00563 979 SMART LRR_typ_2 473 496 IPR003591 -
Vian7g00563 979 SMART LRR_typ_2 162 186 IPR003591 -
Vian7g00563 979 SMART LRR_typ_2 497 520 IPR003591 -
Vian7g00563 979 SMART LRR_typ_2 329 353 IPR003591 -
Vian7g00563 979 MobiDBLite consensus disorder prediction 921 935 - -
Vian7g00563 979 Gene3D Ribonuclease Inhibitor 22 187 IPR032675 -
Vian7g00563 979 SUPERFAMILY L domain-like 47 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00563 Vian-Chr7 13385098 13392269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00563 92 978 Receptor kinase-like Gene Family AT5G07180 65.579 0.0 1138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vian7g00563 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00563 K20718 - gmx:100782307 1840.47