Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00554 ATGAGTTTCAAGAACAGCCCTAACAAGGGACACTCTCCTTACCTCTCTCGCCAATCATCCAACCCTAACCCTAGTTGTAGGGCCAAACCACAGAAGCATGTGGAGCCACCAAGCCCTCCACTTGTAGGCTGCTGCAGAGGCTTCTCCAAAGGGTCCTCTGCTTCTACATCTCCACAAACACTCAAACAAAAGGTGGAAGAATTGGAAAAGCAAGTGATGAAACAAAGAGAAGTTGGAGTGATATACAAGAAAAGAATGGAAAGAACACAAGACTACTTAAGATACTGTCTTCAGACAGCACAAGAAAATGGAATATTGGATCTCTTTCTGAGCTGCAACGGTGAATTTCAACCATCTCCAGTCTCTCTTCACTCCATTACCAGCCCTCAAGCTCATGCCCACCACCCCAATCTATCACTCATTATTCATCAAGCTAAAACCAATGGCTGGTACATTCATCCAAATGAGATTAAATTGGAAGAAAAAATTGGGGAAGGAAGCACCGCAGAGATTCACAGAGGAACATGGCGTGGATTTGAGGTCGCAGTGAAGTGCATTTCTGAAGAGTTTTTCCGTATAAACGAAAACGGCGTCGTTTACTTCTCTCAGGAACTCGAAACGCTGTCGCGGCAACGCCACAGGTTCGTGCTTCAGCTCATGGGCGCGTGCATCGAACCTCCACAGCACGCGTGGGTGGTCACCGAGTACCTGAGCACCACGCTGAAGGAGTGGCTCCATGGACCTGGGAACCGGCGCAGTGAGCGGATGGTGCCACTCCCACCCTTGCAGGAGAGAGTGGGCCGGGCCTTGGAAATAGCCCAAGCTATGCAGTATCTGCACGAGCAAAAGCCCAAACTGGTTCACCGTGACTTGAAGCCCAGCAACATTTTTCTTGATGACGCCCTGCATGTTAGAGTCGCGGACTTCGGCCACGCACGGTTCTTGGGTGACGAAGAAATGGCCCTCACCGGAGAAACAGGAACATACGTTTACATGGCACCAGAGGTAATCCGATGTGAACCTTACAATGAAAGTTGTGATGTGTATAGTTTTGGGATCATACTGAACGAGCTACTAACTGGGAATTACCCTTATGTTGAGACAGAATATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTTCGACCTAAGCTTCCATGTGATGATGATGTTGATAAACTTGGAGAGCTTATTGACCTTATTTGTCTTTGTTGGGACCCAACTCCTACTACTCGACCATCCTTTGCAACAATCACCATTTCTCTCAAAACTTATGTTAAGGAGAATCTCATTTAA 1305 0.4759 MSFKNSPNKGHSPYLSRQSSNPNPSCRAKPQKHVEPPSPPLVGCCRGFSKGSSASTSPQTLKQKVEELEKQVMKQREVGVIYKKRMERTQDYLRYCLQTAQENGILDLFLSCNGEFQPSPVSLHSITSPQAHAHHPNLSLIIHQAKTNGWYIHPNEIKLEEKIGEGSTAEIHRGTWRGFEVAVKCISEEFFRINENGVVYFSQELETLSRQRHRFVLQLMGACIEPPQHAWVVTEYLSTTLKEWLHGPGNRRSERMVPLPPLQERVGRALEIAQAMQYLHEQKPKLVHRDLKPSNIFLDDALHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRCEPYNESCDVYSFGIILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDDVDKLGELIDLICLCWDPTPTTRPSFATITISLKTYVKENLI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00554 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Vian7g00554 434 ProSiteProfiles Protein kinase domain profile. 157 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00554 434 Gene3D Transferase(Phosphotransferase) domain 1 259 433 - -
Vian7g00554 434 ProSitePatterns Protein kinases ATP-binding region signature. 163 184 IPR017441 GO:0005524
Vian7g00554 434 SUPERFAMILY Protein kinase-like (PK-like) 131 421 IPR011009 -
Vian7g00554 434 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 427 - -
Vian7g00554 434 Pfam Protein kinase domain 159 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00554 434 CDD STKc_MAP3K-like 163 422 - -
Vian7g00554 434 SMART serkin_6 157 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00554 434 MobiDBLite consensus disorder prediction 1 27 - -
Vian7g00554 434 Gene3D Phosphorylase Kinase; domain 1 135 238 - -
Vian7g00554 434 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00554 Vian-Chr7 13185883 13190836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00554 147 431 MAP Kinase Kinase Kinase AT4G35780 37.762 6.55e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vian7g00554 Pkinase 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00554 - - gmx:102666416 677.937