Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00548 ATGAGTTCGAGTCCAACAACGTACGAGGAATCGCAACCCCACCCGCCCCAAGAAATAGACTGGCACATGCTCGACAAGTCCAAGTTCTTCTGCATAGGAACAGCCCTCTTCTCCGCCGTCTCCGCCGCCCTCTACCCCGCCGTCGTTTTGAAGACACGTCAGCAAATGTCCGCCGCCGAAATCTCGTGCCGCCACATGTCGCGCTCCATCATGCGTTACGAGGGCCTCCGAGGTTTCTACCGAGGCTTCGGCACCTCCTTGATGGGAACAATCCCCGCACGTGCGCTTTACATGTCGGCGCTCGAAGTCACCAAGAGTAAAGTCGCCTCCGCCACCCTTCGATGGGGGTTCTCCGATGCCTCTGCCACTGCAATCGCTAATGCCGCAGGAGGAGTAGCTTCTGCCATGGCAGCACAGTTGGTGTGGACCCCAGTCGATGTGGTTAGCCAGAGACTCATGGTACAAGGAGTGTGCTACAGAAATGGTTTTGACGCATTCAGAAAAATTATGGGTGTGGACGGTCCAAGAGGGTTCTACAGGGGATTCGGGGTTTCCATTGTGACGTACGCTCCCTCCAACGCGGTCTGGTGGGCTTCGTATTCGATGGTGCAGAAGCTTATCTGGGGCACGATGGGTTCGAAGAACGAGGGATTGAGCTTGGGACGCGATTCGAGGATGGTGATGGGAGTGCAAGGGTTAAGTGCAGTTATGGCAAGTGGGGTTTGTGCATTAGTGACGATGCCACTGGATACGATAAAGACGAGGTTACAGGTGTTGGAGGCAGATGAAGTGAGGGTCGTTGAGGTGGTAAGAGATTTGGTGAGGGAAGGAGGGCTTTTGGCTTGTTATCGAGGGTTGGGACCAAGGTGTGTGTCCATGTCCATGTCTGCCGCCGCCATGATTACTACATATGAGTTCTTGAAACGTGTGTCGGCTAAGAATGCTGATAGATTAGCACTGTATTCATTCTAG 972 0.5401 MSSSPTTYEESQPHPPQEIDWHMLDKSKFFCIGTALFSAVSAALYPAVVLKTRQQMSAAEISCRHMSRSIMRYEGLRGFYRGFGTSLMGTIPARALYMSALEVTKSKVASATLRWGFSDASATAIANAAGGVASAMAAQLVWTPVDVVSQRLMVQGVCYRNGFDAFRKIMGVDGPRGFYRGFGVSIVTYAPSNAVWWASYSMVQKLIWGTMGSKNEGLSLGRDSRMVMGVQGLSAVMASGVCALVTMPLDTIKTRLQVLEADEVRVVEVVRDLVREGGLLACYRGLGPRCVSMSMSAAAMITTYEFLKRVSAKNADRLALYSF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00548 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 107 IPR018108 -
Vian7g00548 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 206 IPR018108 -
Vian7g00548 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 310 IPR018108 -
Vian7g00548 323 PRINTS Mitochondrial carrier protein signature 80 98 IPR002067 GO:0055085
Vian7g00548 323 PRINTS Mitochondrial carrier protein signature 131 153 IPR002067 GO:0055085
Vian7g00548 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 315 - -
Vian7g00548 323 Gene3D Mitochondrial carrier domain 29 319 IPR023395 -
Vian7g00548 323 Pfam Mitochondrial carrier protein 40 107 IPR018108 -
Vian7g00548 323 Pfam Mitochondrial carrier protein 232 314 IPR018108 -
Vian7g00548 323 Pfam Mitochondrial carrier protein 123 207 IPR018108 -
Vian7g00548 323 SUPERFAMILY Mitochondrial carrier 23 307 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00548 Vian-Chr7 13061279 13062674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00548 9 316 Chloroplast and Mitochondria Gene Families AT1G72820 61.607 5.75e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00548 K15121 - gmx:100797365 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00548 7 13061279 13062674 Vian7g00548 7 13061279 13062674 ECH
Vian4g02104 4 37873813 37874847 Vian7g00548 7 13061279 13062674 ECH