Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00516 ATGCTCGTTCAAGTCCTCAACACAGCAGTCATAATGGATGTAAAGGTGGAAAGTCTTAAATCTGAGTTAAAGAGAGTGAGAGAAGAGAATAACACTCTAAGAGTGATGTTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAACACAAGGGCATGAGTTCAAATCAAATAGGATCAGTAACCGAACCTATCTTGGATGTGAACAACAGACGGAGACTAGAGTTTCCCACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACACCCCATGGATGATAGTTTGATAGTAAAAGATGGATATCAGTGGAGAAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTCAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCTCTTCATGAGCCATCTTCATCCACACCTAGAGGCTCATCAGTGGCCAACCAGTTGCCTAGCATAGCAAATGACAAAGAAGCAATGAACATTTTGGCTCTTTCTGGATTGTCTCAAACAGATAGAAGACATGGTGAAGTAATGAATCAACATAACTATGACACCAACATCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAAGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCGAGCTCAAGCAGCAAGATATAAACCTCAATTTGAATATTCCGGAAGAGTGA 807 0.4114 MLVQVLNTAVIMDVKVESLKSELKRVREENNTLRVMFEVLSSKYTKLESHLQEINKEQHKGMSSNQIGSVTEPILDVNNRRRLEFPTAKKPLQIFVRTHPMDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHEPSSSTPRGSSVANQLPSIANDKEAMNILALSGLSQTDRRHGEVMNQHNYDTNIKVEEYVSSLIKDPDFTMSLAEAVARTITGELKQQDINLNLNIPEE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00516 268 SUPERFAMILY WRKY DNA-binding domain 101 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g00516 268 Gene3D WRKY domain 93 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g00516 268 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g00516 268 SMART WRKY_cls 107 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g00516 268 ProSiteProfiles WRKY domain profile. 102 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g00516 268 Coils Coil 9 57 - -
Vian7g00516 268 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 16 253 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00516 Vian-Chr7 12710361 12712007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00516 1 258 WRKY Transcription Factor Family AT1G80840 34.797 3.78e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian7g00516 WRKY 2.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00516 - - gmx:100170679 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00516 7 12710361 12712007 Vian4g02037 4 37088282 37089517 PCT