Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00504 ATGGTTTGTGAGATGGAAAGTGATTGTATTGAAGACATGGACGTTGAAGTCCTCTCTTCAATGTGGCCAGAGGATATTGGCTCTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAAGGGACCAAGATATGTTGGAGGAAGTAACAATCTTAGAGGAGCCAACTATAGCGGATTTTCAGCGTCTCATGGAGCTTACAAATTACACAGATAAAGGGTCTTCTCAGTTGGCATATCTCATGCAACACTGGGAGTATAAGCAGGCTAATGCAGTTCGGCTTCTCAGAGAGGAACTTGACAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTCAGGAAATTGGAGATATTGAAAGACAATCGGTTTGAGGAAGAGAATTATGGAGGTGACAAACGACCAGTTTCTATATTGGATGAGATTTACTATACATGGCAAGATGTGCCAGTGCCACTCAGGAAAAGTGACGTGGTTGTGAAAAACAAGAGGATTGAGATTGATGCTGAGTATGACACTGTTGTGTATTGGAAACAGAGGGCACAGCAGTTGGAAAGACAGTTGGAGGCAAGTGTCAACAGAGAGCAGATACTAACTGACAAGTTGCAAGAAAGTATAAAGAATTTCGAAAGGCAATCTTCACCAGTGGAAGAACTAACTCAGATTCTGAAGAGGGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACATCATAGGGAAAACAGATGTTGAAATTTTCACTGGATCCGGTGTTAAGGAGTCTCAGGATTTCAAGAGGGAAGTGATGGAGAAAGGGTTGCCTGCAAAGAAGGAAATTACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAGGAGATTGCAGTCCAGAAAGCCAAAGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGAGTTGTTAGCATGGCTGAAATTCTTTCCACCACGAAACTTGATCGGGAACAAAGACAGCTTTTGAATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTGGTAAAACATGTTCTCCAGACTGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGACTTGGGTCCTGACATGACTTTTGAATGCAAAGACATGATTTCACCTGATAGTCAAGTAACTTACAGTTCAATATCTTCATGCATAATTGCAGGTCATTGGAGATGTTTTGAGGATTCGGCAGATCCTCACAAATTTAGTCAGTTTACACATGAAGGCAAAGTTGGTATCAATCTTTACGTTGTTTCAGAGCCACCTTTCACCAAAGCAGAAGGCCATCAAAAGATGACCATAGATCAGTCTACAAATTCAGCAAATGGAGTGAAGGAAGAGAAACGTGCATCAACACCACGAAGCAGCAGTGATAAAAATTGTCATGATGGTCAAAAACAGAACGACCATCCTAGCCAAAATCATTTATTCAACGACGAATGTAGATCTTCAGTTGAAAGTGAATGCTCAATGAATGGAGATACTGAGGAGCAAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTGTATGACACAGGAATTGGAATACCAGAAAAGGCAATACCTAATTTATTTAGAAGGTACATGCAAGTAAGTGCAGACCATGCTCGAAAATATGGTGGCACAGGTCTGGGGCTGGCAATATGCAAACAACTGGTTGAGTTAATGGGGGGTCGTTTAACAGTGTCTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTTCCCTACAAAGTTTCAACGGCTTGTGATAATTCTGATGATCCAGATGAACTATCAGATGTGGATGATAATGAGGATGATACCACAGAGGGGTTCTTCCAATTCCAACCACGCACTCTAGGCTCTCTCTTCTCTTCTAATGGGCCTACCAGGCCCCAAAATCTACTTCCAGGTTTCAGAAGCTCAAACAAGTTCAATGGATTTTCAGAGAATTCTTACTCATTCCCCACTACAGACATAAAATCAAAAGGGACTAGTACAACTGAGGATGCATCTTCAGTTGTTGTTGATGCTCCAGAGATCTCTGAGTCAACAAGTTCATCAAATCATAGCCCTGAAACAAAGAACGAAAGTGCAGTTAACACAAACCAACAGAATCAAGATAAGGCACATGCTCGGTTACAAAATGGTAATGTAGACTCTTCTCAACATAAGGAAGAAATCGCACTAGGAACAACGTCAAATGAACCCCAACAAACATGTCATCAAGTGAAGACAGACACAGCCTCCCAATGTGTCGTTAGTAGTAATAATAACACTTCATCAGAAGTGATCAAATCCTCATCAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGAGGTTAGGCTATAGCATGGATGTTGTGAACAATGGAGTGGAAGCTGTACGTGCAGTTCAACGCCATACGTATGATGTCATTCTGATGGATGTGTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACTGGCAATTGGGATGCTGCAAGAAAAGCTGGAATTGAACAATGCTCACCAATTTCACAAGAATGTTCTGTACTACCTAAAAAACGGATCCACATCGTTGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAGGAGTGTTATGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTTACATTCCAAAAATTGAAAGACTGTCTAGAACAGTACCTGAGGTGA 3060 0.4052 MVCEMESDCIEDMDVEVLSSMWPEDIGSDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNRFEEENYGGDKRPVSILDEIYYTWQDVPVPLRKSDVVVKNKRIEIDAEYDTVVYWKQRAQQLERQLEASVNREQILTDKLQESIKNFERQSSPVEELTQILKRADNFLHFILQNAPVVIGHQDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEDLGPDMTFECKDMISPDSQVTYSSISSCIIAGHWRCFEDSADPHKFSQFTHEGKVGINLYVVSEPPFTKAEGHQKMTIDQSTNSANGVKEEKRASTPRSSSDKNCHDGQKQNDHPSQNHLFNDECRSSVESECSMNGDTEEQTHSTETTVWIRCDVYDTGIGIPEKAIPNLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTACDNSDDPDELSDVDDNEDDTTEGFFQFQPRTLGSLFSSNGPTRPQNLLPGFRSSNKFNGFSENSYSFPTTDIKSKGTSTTEDASSVVVDAPEISESTSSSNHSPETKNESAVNTNQQNQDKAHARLQNGNVDSSQHKEEIALGTTSNEPQQTCHQVKTDTASQCVVSSNNNTSSEVIKSSSGPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDVILMDVFMPVMNGLQTTKLIRSYEETGNWDAARKAGIEQCSPISQECSVLPKKRIHIVAMTANTMSESAEECYANGMDSFVSKPVTFQKLKDCLEQYLR 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00504 1019 ProSiteProfiles Histidine kinase domain profile. 361 689 IPR005467 -
Vian7g00504 1019 Gene3D - 342 421 - -
Vian7g00504 1019 MobiDBLite consensus disorder prediction 532 583 - -
Vian7g00504 1019 FunFam Putative histidine kinase 5 342 419 - -
Vian7g00504 1019 Coils Coil 92 119 - -
Vian7g00504 1019 PRINTS Bacterial sensor protein C-terminal signature 673 686 IPR004358 GO:0016310|GO:0016772
Vian7g00504 1019 PRINTS Bacterial sensor protein C-terminal signature 649 667 IPR004358 GO:0016310|GO:0016772
Vian7g00504 1019 PRINTS Bacterial sensor protein C-terminal signature 614 628 IPR004358 GO:0016310|GO:0016772
Vian7g00504 1019 Gene3D - 510 693 IPR036890 -
Vian7g00504 1019 MobiDBLite consensus disorder prediction 697 713 - -
Vian7g00504 1019 Pfam His Kinase A (phospho-acceptor) domain 356 419 IPR003661 GO:0000155|GO:0007165
Vian7g00504 1019 Gene3D - 868 1019 - -
Vian7g00504 1019 SMART HKATPase_4 503 689 IPR003594 -
Vian7g00504 1019 CDD HisKA 353 415 IPR003661 GO:0000155|GO:0007165
Vian7g00504 1019 SMART REC_2 875 1014 IPR001789 GO:0000160
Vian7g00504 1019 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 611 687 IPR003594 -
Vian7g00504 1019 MobiDBLite consensus disorder prediction 695 714 - -
Vian7g00504 1019 FunFam Histidine kinase 5 869 1019 - -
Vian7g00504 1019 MobiDBLite consensus disorder prediction 727 746 - -
Vian7g00504 1019 Pfam Response regulator receiver domain 877 945 IPR001789 GO:0000160
Vian7g00504 1019 Coils Coil 325 345 - -
Vian7g00504 1019 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 511 1018 - -
Vian7g00504 1019 MobiDBLite consensus disorder prediction 553 582 - -
Vian7g00504 1019 MobiDBLite consensus disorder prediction 536 552 - -
Vian7g00504 1019 SMART HisKA_10 354 419 IPR003661 GO:0000155|GO:0007165
Vian7g00504 1019 ProSiteProfiles Response regulatory domain profile. 876 1018 IPR001789 GO:0000160
Vian7g00504 1019 SUPERFAMILY CheY-like 873 1019 IPR011006 -
Vian7g00504 1019 MobiDBLite consensus disorder prediction 754 829 - -
Vian7g00504 1019 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 419 IPR036097 GO:0000155|GO:0007165
Vian7g00504 1019 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 609 689 IPR036890 -
Vian7g00504 1019 Coils Coil 179 210 - -
Vian7g00504 1019 CDD REC_hyHK_CKI1_RcsC-like 877 1014 - -
Vian7g00504 1019 Gene3D PAS domain 225 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00504 Vian-Chr7 12394900 12400738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00504 1 1018 Histidine Kinase Gene Family AT5G10720 53.250 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian7g00504 HATPase_c 3.6e-21 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00504 - - gmx:100796072 1713.74