LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian7g00504	ATGGTTTGTGAGATGGAAAGTGATTGTATTGAAGACATGGACGTTGAAGTCCTCTCTTCAATGTGGCCAGAGGATATTGGCTCTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAAGGGACCAAGATATGTTGGAGGAAGTAACAATCTTAGAGGAGCCAACTATAGCGGATTTTCAGCGTCTCATGGAGCTTACAAATTACACAGATAAAGGGTCTTCTCAGTTGGCATATCTCATGCAACACTGGGAGTATAAGCAGGCTAATGCAGTTCGGCTTCTCAGAGAGGAACTTGACAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTCAGGAAATTGGAGATATTGAAAGACAATCGGTTTGAGGAAGAGAATTATGGAGGTGACAAACGACCAGTTTCTATATTGGATGAGATTTACTATACATGGCAAGATGTGCCAGTGCCACTCAGGAAAAGTGACGTGGTTGTGAAAAACAAGAGGATTGAGATTGATGCTGAGTATGACACTGTTGTGTATTGGAAACAGAGGGCACAGCAGTTGGAAAGACAGTTGGAGGCAAGTGTCAACAGAGAGCAGATACTAACTGACAAGTTGCAAGAAAGTATAAAGAATTTCGAAAGGCAATCTTCACCAGTGGAAGAACTAACTCAGATTCTGAAGAGGGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACATCATAGGGAAAACAGATGTTGAAATTTTCACTGGATCCGGTGTTAAGGAGTCTCAGGATTTCAAGAGGGAAGTGATGGAGAAAGGGTTGCCTGCAAAGAAGGAAATTACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAGGAGATTGCAGTCCAGAAAGCCAAAGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGAGTTGTTAGCATGGCTGAAATTCTTTCCACCACGAAACTTGATCGGGAACAAAGACAGCTTTTGAATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTGGTAAAACATGTTCTCCAGACTGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGACTTGGGTCCTGACATGACTTTTGAATGCAAAGACATGATTTCACCTGATAGTCAAGTAACTTACAGTTCAATATCTTCATGCATAATTGCAGGTCATTGGAGATGTTTTGAGGATTCGGCAGATCCTCACAAATTTAGTCAGTTTACACATGAAGGCAAAGTTGGTATCAATCTTTACGTTGTTTCAGAGCCACCTTTCACCAAAGCAGAAGGCCATCAAAAGATGACCATAGATCAGTCTACAAATTCAGCAAATGGAGTGAAGGAAGAGAAACGTGCATCAACACCACGAAGCAGCAGTGATAAAAATTGTCATGATGGTCAAAAACAGAACGACCATCCTAGCCAAAATCATTTATTCAACGACGAATGTAGATCTTCAGTTGAAAGTGAATGCTCAATGAATGGAGATACTGAGGAGCAAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTGTATGACACAGGAATTGGAATACCAGAAAAGGCAATACCTAATTTATTTAGAAGGTACATGCAAGTAAGTGCAGACCATGCTCGAAAATATGGTGGCACAGGTCTGGGGCTGGCAATATGCAAACAACTGGTTGAGTTAATGGGGGGTCGTTTAACAGTGTCTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTTCCCTACAAAGTTTCAACGGCTTGTGATAATTCTGATGATCCAGATGAACTATCAGATGTGGATGATAATGAGGATGATACCACAGAGGGGTTCTTCCAATTCCAACCACGCACTCTAGGCTCTCTCTTCTCTTCTAATGGGCCTACCAGGCCCCAAAATCTACTTCCAGGTTTCAGAAGCTCAAACAAGTTCAATGGATTTTCAGAGAATTCTTACTCATTCCCCACTACAGACATAAAATCAAAAGGGACTAGTACAACTGAGGATGCATCTTCAGTTGTTGTTGATGCTCCAGAGATCTCTGAGTCAACAAGTTCATCAAATCATAGCCCTGAAACAAAGAACGAAAGTGCAGTTAACACAAACCAACAGAATCAAGATAAGGCACATGCTCGGTTACAAAATGGTAATGTAGACTCTTCTCAACATAAGGAAGAAATCGCACTAGGAACAACGTCAAATGAACCCCAACAAACATGTCATCAAGTGAAGACAGACACAGCCTCCCAATGTGTCGTTAGTAGTAATAATAACACTTCATCAGAAGTGATCAAATCCTCATCAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGAGGTTAGGCTATAGCATGGATGTTGTGAACAATGGAGTGGAAGCTGTACGTGCAGTTCAACGCCATACGTATGATGTCATTCTGATGGATGTGTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACTGGCAATTGGGATGCTGCAAGAAAAGCTGGAATTGAACAATGCTCACCAATTTCACAAGAATGTTCTGTACTACCTAAAAAACGGATCCACATCGTTGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAGGAGTGTTATGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTTACATTCCAAAAATTGAAAGACTGTCTAGAACAGTACCTGAGGTGA	3060	0.4052	MVCEMESDCIEDMDVEVLSSMWPEDIGSDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNRFEEENYGGDKRPVSILDEIYYTWQDVPVPLRKSDVVVKNKRIEIDAEYDTVVYWKQRAQQLERQLEASVNREQILTDKLQESIKNFERQSSPVEELTQILKRADNFLHFILQNAPVVIGHQDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEDLGPDMTFECKDMISPDSQVTYSSISSCIIAGHWRCFEDSADPHKFSQFTHEGKVGINLYVVSEPPFTKAEGHQKMTIDQSTNSANGVKEEKRASTPRSSSDKNCHDGQKQNDHPSQNHLFNDECRSSVESECSMNGDTEEQTHSTETTVWIRCDVYDTGIGIPEKAIPNLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTACDNSDDPDELSDVDDNEDDTTEGFFQFQPRTLGSLFSSNGPTRPQNLLPGFRSSNKFNGFSENSYSFPTTDIKSKGTSTTEDASSVVVDAPEISESTSSSNHSPETKNESAVNTNQQNQDKAHARLQNGNVDSSQHKEEIALGTTSNEPQQTCHQVKTDTASQCVVSSNNNTSSEVIKSSSGPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDVILMDVFMPVMNGLQTTKLIRSYEETGNWDAARKAGIEQCSPISQECSVLPKKRIHIVAMTANTMSESAEECYANGMDSFVSKPVTFQKLKDCLEQYLR	1019

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian7g00504	1019	ProSiteProfiles	Histidine kinase domain profile.	361	689	IPR005467	-
	Vian7g00504	1019	Gene3D	-	342	421	-	-
	Vian7g00504	1019	MobiDBLite	consensus disorder prediction	532	583	-	-
	Vian7g00504	1019	FunFam	Putative histidine kinase 5	342	419	-	-
	Vian7g00504	1019	Coils	Coil	92	119	-	-
	Vian7g00504	1019	PRINTS	Bacterial sensor protein C-terminal signature	673	686	IPR004358	GO:0016310\|GO:0016772
	Vian7g00504	1019	PRINTS	Bacterial sensor protein C-terminal signature	649	667	IPR004358	GO:0016310\|GO:0016772
	Vian7g00504	1019	PRINTS	Bacterial sensor protein C-terminal signature	614	628	IPR004358	GO:0016310\|GO:0016772
	Vian7g00504	1019	Gene3D	-	510	693	IPR036890	-
	Vian7g00504	1019	MobiDBLite	consensus disorder prediction	697	713	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian7g00504	Vian-Chr7	12394900	12400738	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian7g00504	1	1018	Histidine Kinase Gene Family	AT5G10720	53.250	0.0	996

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Vian7g00504		HATPase_c	3.6e-21	CL0025

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian7g00504	-		-	gmx:100796072	1713.74

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