Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00501 ATGAATAGGTCAACAGTATATCTCAGAAAGAAAGAACTACTGACTCAAACCTCAAACAAACAGCATTTGCCAAACATGCGGCAAAACCTTCGACAGCGCCTTCAACAACGGCAACCTTCAATAGCAGCATCGACCCTAGTGGATATTGGACGAGAAGAAGGTGGTCACAGAAAGCTCGAAGAAGGTGGTCACAGAAAGTTCGAAGAAGGTGGTCACAGAAAGCTCGAAGAAGTGTGGTTCAATGGTGGCGCACTTCGATTCTCCTTTTTGTTGTCCCTTGTTGCCAGAGTATATGTTGATAGGATTTCAAACTATTCTTTTGTTAATAGTTTATTAGGTTTTTTCCAGGAATTGGAGGAATTGCTGAAACAATTGGGGAAGAAGCAAAGGTGTGACCTGTGTCTAAAACGCAGGAGATTGACTGTTCACCAGGTTTCTGGAATGCTGGACTGGGACTTTTTGAATAATCAAGCACACAGAGGATACCTTTTTGAGGGGCACCTTACGGTTGATCCTGAACCCCCACAACCTCAATGGTTGGTGCAGTCAAACCTCTTGACAACAGCTGCTACACTCTTTGCTGCCGAATCTTCCCAAGCTTCAGCAGAAAATGGAACCACCCAAGAGGATGCAGCCAATATTCTTCAAGATCTTATAAATAGATTGGAAGAAGTTGTGCCCTTGATGGTGGATGAAGGTACTGTAGCTCCGAGAGCCCCTCCAGCCAGTAAAGAGGTTGTGGCAAAACTTCCAGTCATCACTCTCACAGAGGAAATCCTGGCTACTTTGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAGAATTTAATTTTAAATGACAAAATGCAAGAGCTGCCATGCAAACACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGGTATGAGCTGCAAACTGATGATCATGCCTATGAAAGCTGGAAGGAGCGAGAAAAGGAAGCTGAAGAGGAGAGAAAAGGTGCTGAAAATGCAATTCGAGGTGGTGAATATATGTATGTTTAA 1050 0.4438 MNRSTVYLRKKELLTQTSNKQHLPNMRQNLRQRLQQRQPSIAASTLVDIGREEGGHRKLEEGGHRKFEEGGHRKLEEVWFNGGALRFSFLLSLVARVYVDRISNYSFVNSLLGFFQELEELLKQLGKKQRCDLCLKRRRLTVHQVSGMLDWDFLNNQAHRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQASAENGTTQEDAANILQDLINRLEEVVPLMVDEGTVAPRAPPASKEVVAKLPVITLTEEILATLGKDAECAICRENLILNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00501 349 Pfam Ring finger domain 268 310 IPR001841 -
Vian7g00501 349 Coils Coil 320 340 - -
Vian7g00501 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 187 313 - -
Vian7g00501 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 316 IPR013083 -
Vian7g00501 349 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Vian7g00501 349 SMART ring_2 269 309 IPR001841 -
Vian7g00501 349 CDD RING-H2_RNF126-like 268 310 - -
Vian7g00501 349 FunFam E3 ubiquitin-protein ligase RNF181 230 316 - -
Vian7g00501 349 SUPERFAMILY RING/U-box 263 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00501 Vian-Chr7 12352577 12360792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00501 86 349 C3H Transcription Factor Family AT5G20910 56.439 1.05e-93 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00501 K16274 - gmx:100800189 358.992