Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00486 ATGTCGTCGGTTTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTAGTGAGCACCACGCGCGGACCTTTGGACATCGAGCTATGGCCGAAGGAGGCTCCAAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTACGACGACACTATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAGGTGGCGACCCCACCGGCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTAAAATTCAAGCACAGAGGAATAGTTGCGATGGCAAATGCTGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGATCGTTGTGACTGGCTTGATCGCAAGCATACCATTTTTGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCAAAAATTTTATCAGTCGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCGAACTGAATCTAGAGTTGATACTGAAAGTAAAGAACCAAAGAAGAAAGGTGTAAAAAAATTAAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCGTCAGTGAAGCAAAAGATTAAGAGCAGTCATGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGAAACACCTGATAGTGAATTGAGTGCATCAAGAAGAGATTTGCAGCTGTCTGTTAGGGAGACACTTAACGCAAAGAAAGAAGAGCCTCAGAAAGATTCAGCACCTGGTAACATTGCTCGTCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAGATACTCAAAAAGAGGAAGGAGTTGGGTGATCTCCCTCCGAAGCCTAAGTTGCAAAAAGCAGGAAGATCCATTCCAGAGAATCATGATACGTCAGCACTAAGGTCCAATGCTGCTAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGCTGTCCATGAAGAAAAAGGGAGTGGGATCTGAAGCAAGAGCTGAGCGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCCGACTTCAAGGGCGCGAAGATGAAGTTCTGGCTAAACTTCAAAAATTTAAGAATTCTTTAGCAGCAAAGGAGACACTCCCAGCTAGCGAATCTGAAGATGTTAAAAATGAGGATTTGTCTGACTGGAAAGGTGTCAGTTTAAAATTTACCCCCGAGTCTGGCAAGGACCGCATGTCACGTAATGAGGACCCAAATGATTATGTTGTGCACGACCCTCTTCTGGAAAAGGGGAAAGAAAAGTTTAATAGGATGATGGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTTGA 1479 0.4395 MSSVYVLEPPTKGKVVVSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDDTIFHRVIKDFLVQGGDPTGSGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSRTESRVDTESKEPKKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEETPDSELSASRRDLQLSVRETLNAKKEEPQKDSAPGNIARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKPKLQKAGRSIPENHDTSALRSNAASVDEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKNSLAAKETLPASESEDVKNEDLSDWKGVSLKFTPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMMAKQKRREREWAGRSLT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00486 492 MobiDBLite consensus disorder prediction 260 275 - -
Vian7g00486 492 MobiDBLite consensus disorder prediction 411 430 - -
Vian7g00486 492 MobiDBLite consensus disorder prediction 236 293 - -
Vian7g00486 492 MobiDBLite consensus disorder prediction 305 364 - -
Vian7g00486 492 MobiDBLite consensus disorder prediction 324 338 - -
Vian7g00486 492 MobiDBLite consensus disorder prediction 444 492 - -
Vian7g00486 492 CDD cyclophilin_CeCYP16-like 8 179 - -
Vian7g00486 492 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Vian7g00486 492 Coils Coil 206 233 - -
Vian7g00486 492 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Vian7g00486 492 Gene3D - 2 182 IPR029000 -
Vian7g00486 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vian7g00486 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Vian7g00486 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vian7g00486 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vian7g00486 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vian7g00486 492 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 218 IPR044666 -
Vian7g00486 492 MobiDBLite consensus disorder prediction 236 250 - -
Vian7g00486 492 MobiDBLite consensus disorder prediction 438 492 - -
Vian7g00486 492 MobiDBLite consensus disorder prediction 378 397 - -
Vian7g00486 492 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Vian7g00486 492 MobiDBLite consensus disorder prediction 341 364 - -
Vian7g00486 492 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Vian7g00486 492 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00486 Vian-Chr7 12111682 12118300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00486 9 172 U-box Gene Family AT5G67530 47.561 2.80e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00486 K12737 - gmx:100793148 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00486 7 12111682 12118300 Vian7g00486 7 12111682 12118300 ECH