Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00478 ATGGCAAACTTCCACCGTAACAACGTCGAGAACGTGGTCCTTGGCCACCACCGTTCCAAGAGCACCTCCGTCGCCGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACCACCTCCTTCCGCCGCCTGGTCTTCAATGCCGTCAGCTGCGGCGCCAGCTCCCGCTACGCCGAGAGATCGGACACGTCCTCCGAGAGACACTACCACCAACCGAAACAACAGCACCGGCACAAGACGAAGCCGAATAACGCGAAGTCGGAGAAGCTCTCGGATCTGCTAAACCTGGCCGAGGTCGAAGCTGACGCGGAAACGAAGAAGAAAGAGGACAAACTCGAGGAGCTGAAGAGCCTAGTGAAGGAGCTTCATAAGGAAGATGAGGAAGAGAAGGAAGAAGAATCAATGACGCGGAGAAGAGAAGCTGCTTCGAAAGTGAGGTTGCTAGCCAAAGAGGATTTGGAAGTTAGAGGGACGCTCGCGATGCTTGGAGCTATTCCTCCTCTCGCCGCAATGCTCGATGAATCCAAAAACGACGTCGATTCGCTCGTTGCTTCTCTCTACGCGCTGCTCAACCTTGGAATCGGAAACGACGCGAATAAAGCAGCTATTGTGAAAGTTGGGTCAGTTGAGAAGATGCTGAAGCTGATTGAATCTCCAGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGACTTAGTGCGTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAGAACCCTTCAGAGTTTAGAGGACAAGAGTAGTCCCCAAGCCAAGCAAGATGCTTTACGGGCATTGTACAATCTTTCGATCTACCCAGCCAATGTTGCATTTGTTTTGGAAACAGCTTTGGTTCTGTTTCTGGTGAATTCAATAGGGGACATGGAGGTAACTGAAAGAGCCCTTGCGATTCTCAGCAACTTGGTGTCGACCCGAGAGGGTAGAAAGGCGATTAGTGCAGTGCAAGATTCGATTCCGATCCTGGTGGATGTGTTGAATTGGACAGATTCACCAGAATGCCAGGAGAAGGCGTCCTACATTTTGATGGTTATGGCACACAGGTCTTATGGGGACAAACAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTAGCTCAGAAAAGGGCATCAAGGATACTAGAAATTTTGAGGGTAGACAAAGGGAAACAGATTTCTGGGAGCTATGGCTTGGGTGCTGCTGTCTCTGCCCCTATTAGCGGCTCTTCGTCCGCGAAGCCGGACGACGGAGGGAGGGAGTGTTTTGATGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAACTAGTCCAACAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAAAGGGCCAATTTGCCTCACGATATTGTGCCATCGGATCATTTTAAGTCACTCACCTCAAGTTCTACTTCAAAGAGCCTACCATTTTGA 1509 0.4964 MANFHRNNVENVVLGHHRSKSTSVAGGHFRLWHSLSTTSFRRLVFNAVSCGASSRYAERSDTSSERHYHQPKQQHRHKTKPNNAKSEKLSDLLNLAEVEADAETKKKEDKLEELKSLVKELHKEDEEEKEEESMTRRREAASKVRLLAKEDLEVRGTLAMLGAIPPLAAMLDESKNDVDSLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLEDKSSPQAKQDALRALYNLSIYPANVAFVLETALVLFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHRSYGDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQISGSYGLGAAVSAPISGSSSAKPDDGGRECFDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00478 502 Coils Coil 443 463 - -
Vian7g00478 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 502 - -
Vian7g00478 502 MobiDBLite consensus disorder prediction 425 457 - -
Vian7g00478 502 MobiDBLite consensus disorder prediction 482 502 - -
Vian7g00478 502 SMART arm_5 326 365 IPR000225 GO:0005515
Vian7g00478 502 SMART arm_5 195 238 IPR000225 GO:0005515
Vian7g00478 502 SMART arm_5 284 322 IPR000225 GO:0005515
Vian7g00478 502 SMART arm_5 239 283 IPR000225 GO:0005515
Vian7g00478 502 SMART arm_5 151 193 IPR000225 GO:0005515
Vian7g00478 502 MobiDBLite consensus disorder prediction 55 90 - -
Vian7g00478 502 Gene3D - 53 264 IPR011989 -
Vian7g00478 502 Gene3D - 265 415 IPR011989 -
Vian7g00478 502 SUPERFAMILY ARM repeat 113 405 IPR016024 -
Vian7g00478 502 MobiDBLite consensus disorder prediction 487 502 - -
Vian7g00478 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 206 IPR000225 GO:0005515
Vian7g00478 502 Coils Coil 93 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00478 Vian-Chr7 11988159 11990389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00478 130 435 U-box Gene Family AT1G24330 29.721 1.38e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00478 - - gmx:100788575 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00478 7 11988159 11990389 Vian4g02028 4 36972534 36974119 PCT