Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00474 ATGGCTTCTGATGAGGTTACCTCAGATAGCATACTTGTTTCCCAAGGATCCTCAAATGGACACCTTGATGGTCTTCCGATACCCCGCTATAACTTTGATGAGTCAGACGAGGAAGATCAAGTTATTTTCCATACAGAACATGGAAAATATGGAGAAAATGTGAAAGTTGCTGGAAATGATGCCAATGTGGGCGGCTTGGTTGAAGGGCTTCCTGGAAGCTCCCGTCAAAGGAAGCGAAAAGATGATTCTAACGATTCAGTTATTCTCCCTAGGAAACGAGGGAGACCTAGAAAAAACACTACGAAATGTGATTCAACTGACACTAATGTTAATAGTTTTGCTGATCGGCTTCGTGAAAGATCAAGTATAAAGAAGCCAACTTATGTTCTTGATCAGTTAGAAGAAGATTTAGATATTTTCCCCAGCACACATGGGGACCCTACAGAAGACATAGTCAAAATTGAAAGAAGTGACACTATAGTTGGAGGTGCCCTGAATGTGGTTCCAGAAGAAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAATAAACAGCTTCCATCGTCGTATCGAATCAGCCAAGAATTCTAACGAAGATTTTGTTGCCATTAGATCCGAATGGACTATGGTTGATAGAATACTTGCTTGCAGACAAGGTCATGGAGACGATAAGAAGGCATACCTTGTAAAGTGGAAAGAGCTCCCGTATGACGAGTGCCACTGGGAGCTTGAATCAGATATTTCTGCTTTTCAAGCAGAAATAGAAAGATTCAACAACTTTCAGTCTAGAACAAGGAGAGTTTTGGATGCTTCTGCATCAGAAAATCTGCAGAAAGAATTTCTTCCGTATGAAAGTAGCCCCGAGTTTCTTTCAGGGGGAAAAACCATTCAGAGCATTGCGTTTTTAGCATCGCTCTTTGAAAGTAACGTTTCACCACACTTGGTGATTGCTCCCCTCTCCACGTTGAGAAACTGGGAGCGTGAATTTGCAACGTGGGCACCTCAGATGAATGTTGTTATGTATTTTGGATCTGGCAACGCCCGTGATTTGATACGAGAGTATGAGTTTTACTTTCCCAAGAACCAAAAGGGGTTCCAGAGGAAGAAATCTAAACAGCTTGTTGATGAAACCAAGCAAGGAAGAATAAAGTTTGATGTTCTTTTGACATCATATGAGATGATAAATTGTGATTTATTAGCACTAAAGCCTATAAAGTGGGAGTGCATGATAGTTGATGAGGGTCACCGTCTGAAAAACAAAAATTCTAAGTTGTTTTCTTCGTTGACCCAACTTTCCAGCAAACATCGTGTGCTTTTGACTGGAACTCCTCTTCAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAATTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTACATAAAATGTTGGCACCGCATCTTTTGCGAAGGATGAAGAAAGATGTGATGACAGAACTACCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTATCCAGTCTGCAGAAAGAATACTACAAGGCAATTCTGACTCGGAATTATCCGATATTAACCCGCCAAGCTGGTGTACATATTTCTCTTATCAACGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTTAATGGACTTCAACCTGATCTTAATATTAATGATGAAAAAGCTCCACTTGACCACTTGCTTGAATCCTCCGGGAAGTTGCAACTGTTAGACAAGATGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATATTCCCAATTTCAGAAAATGCTGGACTTGCTTGAAGATTACTGCTGTTACAATAATTGGCAATTTGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAAGTAAAGATAGATCGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACAAGAGCTGGGGGATTAGGGATAAACCTTACTACAGCGGACACATTCAATAATTTTTTCCTGCGACTTACTGATTCGACTGGCAACTACAGTGATTGGAATCCTCATGCTGATTTGCAAGCCATGGCCCGGTCGCACCGCCATGGACAAAAAAAGAAGGTGATGATTTATAGGCTCATAACAAGAGGAACAATTGAAGAAAGGATGATTCAAATGACAAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGCTACAGGCTGAAAACATTAAGCAGGAAGAGTTAGATGATATCGTAAGGTATGGCGCAGAGGAGTTATTTGCTGATGAAAATGATGAGGCAAGCAAGTCTCGTCAAATTCATTATGATGACGATGCTATAGACAGATTGCTGGATCGTGATGGAGTTGGAGGTGAAGATGCTGGTTTGGATGGTGAAGATGAAGATGGATTTCTGAAGGCATTTAAGGTGGCAAATTTCGAATACATAGACGAAGTTAAGCCAGCAGAGGAGGTGGCACAAAAAGAATCAAAGGAGAATCAATTCTCTGCTGCCAATTTGAAGAAATCAGCTTACTGGGATGGCTTGTTGAAAAAAGGATATGATCAGTGTAGAGTCGAGGATTTGAATGCCTTAGGCAAAGGGAAGCGAACCCGCACCAAATGGCTGGGGGAAGGTTGTAGTAATTGGGGAGATATAAGCTCCGATGGTGAAGATTATGAAGCGGATCATAGTGAAGATGATTCAAATTCATTTGAGACTCCTCCTACTAGAAGGTTGCAGAGAAAGAAATTACGCGCAGAGAGCCCAGAGCCACTTCCTTTGATGGAAGGTCAAGGAAAATCGTTGAAAGTACTTGGCTTTAGTCAAAATCAAAGGGCTGATTTTCTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAAGAGTTTGCTTCCAGGATGAAACACAAGAGTTATGAAGAAATCACGGAGTATGGCAAACTTTTTTTGTCTCATATTGCAGAAGATATTACTGATTCACCAACATTCACAGATGGCGTTCCAAAAGAAGGACTTCGAATACAAGATGTACTTGTAAGGATTGCACTTTTGAATTTGATATCAGAGAAAGTAACTGATATCTTAATACGCTACCCACGTTTGAAGGGTACAAATTTCTGGAAGACGGAGCATGATTTAGTGCTACTGCAGGCCGTGTTGAAGCATGGCTATGCAAGGTGGCATGATATTATTAAGGATAAGGATCTGAAGATTGAGAAGGTCATCTGTCAGGAGTTGAATATTCCAGTTGCAGATGTATCAGTTCAAGTACAGTCTGACTCACGAAAGCTCTATGGTCCAAATATCACAAATGTGGAGTCTAGCACGAGCTTCAACAAATCTAAGCAGAGTGATTTGTGTGGTTCCAGTGATCGTGGGAAGCAAACGCAGTCGCATCGTAAATCCGTCACGTGGGATCAGAATAAACAAATCCATAGAGCACATATTGAGTTTATCAAGAAAAGGCTTCGTCTCTTGGAAACAGGTCTCACCGCTGAGTGCCAGAATGAACGCTTTAGTGATCTCAGAGCAAATGAGGAAGAAAACAAACTATTTAAAGGCAAGTCCACGCGTGTTAATGTAAACAAAATCGTCTGCAACTGGTGTATCTTTTCAATGAGATGTGGCAAACTGTGGAGGGCAGCCAAGCCGGTTTTGAAGAAACGGCAACAGAAGAGCAACAACGCAAAGCTATTAGGAACTTGGGTCAAATCCAAAGCATTTCTGCTGATATCAAAGAACTTCTACGTTGTGAGACACAGGAGAGAGAAAATTTTCAATAACAGATCAAATACATTATCACAGACTGGAGTTGATGGCCCTGAAGAAGTTAAATGCAAAGCTAAAGATTTGGTTATGGAGTTTTGTACAGGAGATGAATTGATATCCAAATGCTAG 3900 0.4074 MASDEVTSDSILVSQGSSNGHLDGLPIPRYNFDESDEEDQVIFHTEHGKYGENVKVAGNDANVGGLVEGLPGSSRQRKRKDDSNDSVILPRKRGRPRKNTTKCDSTDTNVNSFADRLRERSSIKKPTYVLDQLEEDLDIFPSTHGDPTEDIVKIERSDTIVGGALNVVPEEEFLKAFKTQPGLKIRINSFHRRIESAKNSNEDFVAIRSEWTMVDRILACRQGHGDDKKAYLVKWKELPYDECHWELESDISAFQAEIERFNNFQSRTRRVLDASASENLQKEFLPYESSPEFLSGGKTIQSIAFLASLFESNVSPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGSGNARDLIREYEFYFPKNQKGFQRKKSKQLVDETKQGRIKFDVLLTSYEMINCDLLALKPIKWECMIVDEGHRLKNKNSKLFSSLTQLSSKHRVLLTGTPLQFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVMTELPPKKELILRVELSSLQKEYYKAILTRNYPILTRQAGVHISLINVVMELRKLCCHPFMFNGLQPDLNINDEKAPLDHLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQKMLDLLEDYCCYNNWQFERIDGKVGGAERQVKIDRFNAEDSSRFCFLLSTRAGGLGINLTTADTFNNFFLRLTDSTGNYSDWNPHADLQAMARSHRHGQKKKVMIYRLITRGTIEERMIQMTKKKMVLEHLVVGRLQAENIKQEELDDIVRYGAEELFADENDEASKSRQIHYDDDAIDRLLDRDGVGGEDAGLDGEDEDGFLKAFKVANFEYIDEVKPAEEVAQKESKENQFSAANLKKSAYWDGLLKKGYDQCRVEDLNALGKGKRTRTKWLGEGCSNWGDISSDGEDYEADHSEDDSNSFETPPTRRLQRKKLRAESPEPLPLMEGQGKSLKVLGFSQNQRADFLQILMRFGVGDYDWKEFASRMKHKSYEEITEYGKLFLSHIAEDITDSPTFTDGVPKEGLRIQDVLVRIALLNLISEKVTDILIRYPRLKGTNFWKTEHDLVLLQAVLKHGYARWHDIIKDKDLKIEKVICQELNIPVADVSVQVQSDSRKLYGPNITNVESSTSFNKSKQSDLCGSSDRGKQTQSHRKSVTWDQNKQIHRAHIEFIKKRLRLLETGLTAECQNERFSDLRANEEENKLFKGKSTRVNVNKIVCNWCIFSMRCGKLWRAAKPVLKKRQQKSNNAKLLGTWVKSKAFLLISKNFYVVRHRREKIFNNRSNTLSQTGVDGPEEVKCKAKDLVMEFCTGDELISKC 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00474 1299 MobiDBLite consensus disorder prediction 61 107 - -
Vian7g00474 1299 MobiDBLite consensus disorder prediction 73 92 - -
Vian7g00474 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 578 749 IPR001650 -
Vian7g00474 1299 MobiDBLite consensus disorder prediction 1108 1127 - -
Vian7g00474 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 757 IPR027417 -
Vian7g00474 1299 SUPERFAMILY Chromo domain-like 202 264 IPR016197 -
Vian7g00474 1299 Coils Coil 453 473 - -
Vian7g00474 1299 Gene3D - 200 263 - -
Vian7g00474 1299 Gene3D - 1009 1147 - -
Vian7g00474 1299 MobiDBLite consensus disorder prediction 898 921 - -
Vian7g00474 1299 Pfam CHD subfamily II, SANT-like domain 908 1027 IPR009462 GO:0003677|GO:0006338
Vian7g00474 1299 MobiDBLite consensus disorder prediction 889 927 - -
Vian7g00474 1299 CDD SF2_C_SNF 573 709 - -
Vian7g00474 1299 CDD CD2_tandem 210 263 - -
Vian7g00474 1299 Pfam Chromo (CHRromatin Organisation MOdifier) domain 213 263 IPR023780 -
Vian7g00474 1299 Gene3D - 297 492 IPR038718 -
Vian7g00474 1299 Pfam CHD subfamily II, DUF1087 820 870 IPR009463 -
Vian7g00474 1299 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 168 1245 - -
Vian7g00474 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 483 IPR027417 -
Vian7g00474 1299 ProSiteProfiles Chromo and chromo shadow domain profile. 212 267 IPR000953 -
Vian7g00474 1299 Pfam SNF2-related domain 297 550 IPR000330 GO:0005524|GO:0140658
Vian7g00474 1299 MobiDBLite consensus disorder prediction 1 21 - -
Vian7g00474 1299 SMART helicmild6 604 698 IPR001650 -
Vian7g00474 1299 MobiDBLite consensus disorder prediction 1 31 - -
Vian7g00474 1299 Gene3D - 493 729 IPR027417 -
Vian7g00474 1299 SMART DUF1086_2 891 1037 IPR009462 GO:0003677|GO:0006338
Vian7g00474 1299 SMART chromo_7 210 266 IPR000953 -
Vian7g00474 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 465 IPR014001 -
Vian7g00474 1299 SMART ultradead3 280 484 IPR014001 -
Vian7g00474 1299 Pfam Helicase conserved C-terminal domain 575 698 IPR001650 -
Vian7g00474 1299 MobiDBLite consensus disorder prediction 1108 1140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00474 Vian-Chr7 11922198 11935334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00474 573 727 RAD5 or RAD16-like Gene Family AT5G22750 37.580 1.79e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian7g00474 SNF2_N 8.4e-30 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00474 K11643 - gmx:100779829 1318.91