Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00446 ATGGCCACTTTTGCCACAGAACTTGTGGTGACAATCACGACTAAGGACATGAATATGTGTTTTATTACCGTTCTTCTGCTACAGGTTGTTGCAGTCCGAGTTCATTGTTGGCCTTTATACTGTGTTCTGGTTTCACCCGATCTGCACCTCCTGATCCAGCGCCTCGAGTCGCAGTCCCTCCAGATCCGCTCTCAGGTCCAGTCCTACCTCGTCTCACACCGTGAAGACTTCACGCGCCTCTTCTCTCTCTGCAACGATGCCGTTTCGCAGACTCGCGAGGTCTCCGACGACGTCGCTGCCATTATCCGACTCCTCTCCGACCGACCGACCGATGTCGAGGTGCGCGAGGTTGTGTCGGAAATGAAGGTGAAGAAAGAGGAGCTAAAGGTGAAGGAACTCCTAGGGCTGGTTGGAACTGTTGTGGGGTTGAACAAGAGGTTAGAAAGTGTGAAGGAATCGTTGAGGAGTGGAAGGTTCGAATTTGCAGTACAAGGGTTGAAGGAGTTGAAAGTGTCGTTGAGGATTGACGAGAAGGATGATAGGGAGCCTTTGGAGTTTTCTAAGGTTCAACCAAAGATGCAGAACGAGGAAGGACAGATCACCGAGCTTTACATTCCTAGGAAGTGTTCTGCTACAAACAGGTTGATTACTGCGAAGGACCATGCTTCGGTTCAGATTAACATTGGTCATGTGGATGAGAATGGTATCTACAATGGTCAATTCTCCACCTTTGCCCTTTGCGGCTTCATCCGTGCTCAGGGTGATGCCGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAACTGAAGTTAAGCAACAGTAG 825 0.4982 MATFATELVVTITTKDMNMCFITVLLLQVVAVRVHCWPLYCVLVSPDLHLLIQRLESQSLQIRSQVQSYLVSHREDFTRLFSLCNDAVSQTREVSDDVAAIIRLLSDRPTDVEVREVVSEMKVKKEELKVKELLGLVGTVVGLNKRLESVKESLRSGRFEFAVQGLKELKVSLRIDEKDDREPLEFSKVQPKMQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGQFSTFALCGFIRAQGDADSALDRLWQKKKTEVKQQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00446 274 ProSitePatterns Ribosomal protein S21e signature. 203 211 IPR018279 GO:0003735|GO:0005840|GO:0006412
Vian7g00446 274 Pfam Ribosomal protein S21e 193 268 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vian7g00446 274 Pfam Centromere/kinetochore Zw10 55 186 IPR009361 GO:0000278|GO:0000775|GO:0005634
Vian7g00446 274 Gene3D - 189 273 IPR038579 -
Vian7g00446 274 FunFam 40S ribosomal protein S21 193 273 - -
Vian7g00446 274 PANTHER 40S RIBOSOMAL PROTEIN S21 193 273 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00446 Vian-Chr7 11446171 11458040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00446 193 273 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 83.951 4.26e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00446 K02971 K11578 gmx:100802645 185.267