Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00421 ATGGTCCAAGCAAAGAAGAAGTTCAGAGGAGTGAGGCAACGCCAATGGGGCTCATGGGTCTCAGAAATTCGTCACCCTTTGCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAATGGTCGAAATGCCAAGACCAATTTCCCCACACGAGCATTGAATGAGGCTGAAGGTTGCACCAATTCCACCGTCTGTGAGGACCCTTTTTCGTCTCCGAATGTTCTTTCTGAGGATCTGAGTAGAAAACTGAAGAGGTGTTGCAGAGACCCTTCTCCATCCCTCACATGTCTGAGACTGGATGCTGACAATTCCCACATTGGAGTGTGGCAAAAGGGTGCAGGAGCACACTCAGACTCCAATTGGATTGTGAGGGTGGAGCTTGGGAAGAAACGTGCAGAGACTGAGTCAGGTGTGTCAGAAGGATCTACACAAAATGATGGTGAAGAAGACGAAGAAGATAGAATTGTGATGCAGATGATTGATGAGCTGCTTAATTGGAACTATCCATGTGCTGGTTCAAGTATAATTAATTCACCTTAG 585 0.4735 MVQAKKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPTRALNEAEGCTNSTVCEDPFSSPNVLSEDLSRKLKRCCRDPSPSLTCLRLDADNSHIGVWQKGAGAHSDSNWIVRVELGKKRAETESGVSEGSTQNDGEEDEEDRIVMQMIDELLNWNYPCAGSSIINSP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00421 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vian7g00421 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 145 - -
Vian7g00421 194 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Vian7g00421 194 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vian7g00421 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vian7g00421 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vian7g00421 194 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Vian7g00421 194 MobiDBLite consensus disorder prediction 147 166 - -
Vian7g00421 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vian7g00421 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vian7g00421 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00421 Vian-Chr7 10999068 10999838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00421 6 188 AP2-EREBP Transcription Factor Family AT5G25390 60.000 3.80e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian7g00421 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00421 - - var:108320982 387.882