Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00418 ATGGGGGATACGAAGAACGAGGCGTACGAGGAGGACCTTCTTGACTATGAAGACGAAGAAGAGAAGGAGCCTGAAGGTGCTAATAAAGTCAACGGTGAAGCTGTCAAGAAGGGTTATGTTGGAATTCACAGTTCAGGATTCAGAGATTTTTTACTGAAGCCAGAACTTCTTCGGGCTATAGTGGACTCTGGATTTGAGCACCCTTCTGAAGTGCAACATGAGTGTATACCTCAAGCTATACTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTATTTGTTCTATCTACCCTGCAGCAGATTGACCCTGTTGCCGGGCAAGTTTCTGCACTTGTCTTATGTCATACAAGGGAATTAGCATACCAGATATGCAACGAATTTGAAAGGTTTAGCACCTACCTACCCGATCTAAAGGTTGCTGTCTTTTATGGTGGCGTCAACATAAAAGTTCACAAGGATCTATTGAAGAACGAATGCCCTAGTATTGTTGTTGGTACACCTGGAAGAATACTTGGATTGGCTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGACATTTCATTTTAGATGAATGTGATAAGATGCTAGAATCTCTGGACATGAGAAAAGATGTGCAAGCTATTTTCAAGATGACACCCCATGATAAGCAAGTTATGATGTTTTCTGCAACGCTCAGCAAGGAAATACGTCCTGTCTGCAAAAAATTTATGCAAGATGATATTCTCTATTTGTCATGGCTAATGGTGGGAGGGGGGTTGTTAGTGTATTCTGGGAACGTTCCTGCTAGAGTTCTCAAGAGTCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAACGACCTTCTTGATGCATTGGACTTCAATCAAATTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCGGAGCTGGACAAACTGCTTAGAGAATGCAATTTCCCATCTATTTGCATTCATTCTGGAATGTCTCAAGAAGAAAGGTTAAAACGATATAAGGGTTTTAAGGAGGGTCATACAAGAATTCTAGTTGCAACAGATTTGGTTGGTAGGGGTATCGATATCGAACGTGTGAATATAGTTATAAACTATGACATGCCGGATTCTGCTGATACGTACTTGCACAGGGTTGGCCGCGCCGGACGATTTGGAACCAAGGGCCTTGCAATTACATTTGTTTCATGTTCCACTGATGTTGATGTTCTCAACAATGTTCAATCCAGGTTTGAAGTTGATATAAAGCAGCTTCCTGAGCAGATTGATACAGCTAGCTACAGTAGGATTTCATGTTCTCTTTGA 1377 0.4125 MGDTKNEAYEEDLLDYEDEEEKEPEGANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICNEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDDILYLSWLMVGGGLLVYSGNVPARVLKSPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTASYSRISCSL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00418 458 CDD SF2_C_DEAD 290 419 - -
Vian7g00418 458 FunFam DEAD-box ATP-dependent RNA helicase 56-like 33 250 - -
Vian7g00418 458 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Vian7g00418 458 SMART ultradead3 64 262 IPR014001 -
Vian7g00418 458 MobiDBLite consensus disorder prediction 1 29 - -
Vian7g00418 458 Gene3D - 33 249 IPR027417 -
Vian7g00418 458 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 428 - -
Vian7g00418 458 SMART helicmild6 329 410 IPR001650 -
Vian7g00418 458 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Vian7g00418 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 424 IPR027417 -
Vian7g00418 458 Gene3D - 286 453 IPR027417 -
Vian7g00418 458 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Vian7g00418 458 Pfam Helicase conserved C-terminal domain 303 410 IPR001650 -
Vian7g00418 458 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 289 450 IPR001650 -
Vian7g00418 458 CDD DEADc_DDX39 44 245 - -
Vian7g00418 458 FunFam DEAD-box ATP-dependent RNA helicase 286 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00418 Vian-Chr7 10970212 10977755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00418 1 451 Eukaryotic Initiation Factors Gene Family AT5G11200 83.726 0.0 767