Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00391 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTGAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCCATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCCGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAGCAACAACAGCAGCAACAACAGCAACAATCACAACCTCAGCAGTCACAACATCAGCAGCAACAGCAGCAGCAACAACAACACATTCAGATGCAACACATCCTGTTACAGAGGGCTCAGCAACAACAACAACAACAGCAACAACAACAACAACAACAGCAACAGCAGCAACAACAACCACAACAGCAACAACAACAACAGTCACAACATCAACAACCACCACCTCAGCAACAGCAGCAGGGTAGGGATAGGACCCATCTCTTAAATGGTGGTACCAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACTGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCCGTTTTAACTCCCAGAGCTGCAGGCCCAGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGTTTGGAGCAACTACGATCTGGTATAATTCAACAGAAACCACCTTTCATACAGTCTCCTCAACCATTTCATCAACTTCCAATGTTGACACCACAACATCAGCACCAACTAATTCTGGCACAACAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGGCTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCGAACCCTGTTGGTGATGTGGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTCCAGCGTAGTGATACAGACATGCTAATGAAGTTGAAACTGGCACACTTACACCATCAACAACAGCAGAATGCCAATCCACAACAACAGCAGCAGCAACTGCAACAACATACTCTATCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATAGGGGCAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCTTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGGAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCGACTCATACACCCGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCGAAGCCATTAATGATGTTTGCTGCTGATGGTGCTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATACTGACCCGAGGGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGTGGATGAAGAGCCTCCATTTGGTGTCAACATTCCTGCATATGACAACTTTGGTTCTTGTTGCCGAAGAATCCATCTCGCATCTTTGCATGCAAAGTTTAAAGGGACTTGGCTCATGGGTATACCCTTGAAGGGGTTTAGGGGCTTTTGGAATTTGGATCGGGTTCCTGAGTTTCTGATGAAAAAATACACTGAACAACAGGTTGGAGGTTTTACATTTTCTGAGGTGAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTACAGCAAAAGGCTACTCTTGAAGAGCATGCTTCTTTAATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGGCTTGCAACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTAGTTTTACTGGTCATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTCGATGGTGAGATCCGATATTGGAGTATTAAGAATGGAAGTTGTTCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATACTTGATGTGGAAACACAAGGACATACAAAATCAATACATTCAGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTGAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAATTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTTTTGGTAGTTGGTTGTTACGAGGCAAGTGTACATCCTTCTCTTATTTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCCGCATTGGCAGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTGAAGCTATGGAAGTGA 2934 0.4451 MSQTNWEADKMLDVYIHDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQFMKAREQQQQQQQQQQSQPQQSQHQQQQQQQQQHIQMQHILLQRAQQQQQQQQQQQQQQQQQQQQPQQQQQQQSQHQQPPPQQQQQGRDRTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLTPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGIIQQKPPFIQSPQPFHQLPMLTPQHQHQLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHHQQQQNANPQQQQQQLQQHTLSNQQSQSSNHNMHQQDKIGAGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFAADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKVDEEPPFGVNIPAYDNFGSCCRRIHLASLHAKFKGTWLMGIPLKGFRGFWNLDRVPEFLMKKYTEQQVGGFTFSEVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLQQKATLEEHASLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRSFTGHSASVMSLDFHPNKDDLICSCDVDGEIRYWSIKNGSCSRVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYEASVHPSLISLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats profile. 945 977 IPR001680 GO:0005515
Vian7g00391 977 Pfam LisH 10 36 IPR006594 GO:0005515
Vian7g00391 977 MobiDBLite consensus disorder prediction 422 459 - -
Vian7g00391 977 SMART WD40_4 727 766 IPR001680 GO:0005515
Vian7g00391 977 SMART WD40_4 938 977 IPR001680 GO:0005515
Vian7g00391 977 SMART WD40_4 770 810 IPR001680 GO:0005515
Vian7g00391 977 SMART WD40_4 685 724 IPR001680 GO:0005515
Vian7g00391 977 SMART WD40_4 841 883 IPR001680 GO:0005515
Vian7g00391 977 SMART WD40_4 889 936 IPR001680 GO:0005515
Vian7g00391 977 SMART Lish 8 40 IPR006594 GO:0005515
Vian7g00391 977 MobiDBLite consensus disorder prediction 422 545 - -
Vian7g00391 977 MobiDBLite consensus disorder prediction 256 275 - -
Vian7g00391 977 MobiDBLite consensus disorder prediction 470 529 - -
Vian7g00391 977 Pfam WD domain, G-beta repeat 773 810 IPR001680 GO:0005515
Vian7g00391 977 Pfam WD domain, G-beta repeat 853 882 IPR001680 GO:0005515
Vian7g00391 977 Pfam WD domain, G-beta repeat 730 766 IPR001680 GO:0005515
Vian7g00391 977 Pfam WD domain, G-beta repeat 692 723 IPR001680 GO:0005515
Vian7g00391 977 Pfam WD domain, G-beta repeat 940 977 IPR001680 GO:0005515
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 819 IPR001680 GO:0005515
Vian7g00391 977 MobiDBLite consensus disorder prediction 90 114 - -
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 777 815 - -
Vian7g00391 977 CDD WD40 688 977 - -
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 734 769 - -
Vian7g00391 977 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 613 - -
Vian7g00391 977 MobiDBLite consensus disorder prediction 238 299 - -
Vian7g00391 977 ProSitePatterns Trp-Asp (WD) repeats signature. 753 767 IPR019775 -
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats profile. 692 723 IPR001680 GO:0005515
Vian7g00391 977 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vian7g00391 977 MobiDBLite consensus disorder prediction 148 188 - -
Vian7g00391 977 Gene3D - 823 977 IPR015943 GO:0005515
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 945 977 - -
Vian7g00391 977 SUPERFAMILY WD40 repeat-like 687 977 IPR036322 GO:0005515
Vian7g00391 977 Coils Coil 124 147 - -
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats profile. 734 769 IPR001680 GO:0005515
Vian7g00391 977 ProSiteProfiles Trp-Asp (WD) repeats profile. 852 892 IPR001680 GO:0005515
Vian7g00391 977 Gene3D - 677 822 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00391 Vian-Chr7 10502899 10518560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00391 710 884 U-box Gene Family AT2G33340 31.841 2.73e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vian7g00391 WD40 0.089 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00391 - - gmx:100779972 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00391 7 10502899 10518560 Vian4g01936 4 35965527 35973271 PCT