Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00384 ATGGAGCGGCCTGGAAGCTTAAATGGCAGTCAGCATGTGATAGAAATAGGTGGGAGTTCCGATGCTTCTACTTCAACTGCGACACATCATGATAGCAATTTTAATGGCACACATGTTACGCTACACGAAGAAAGAGTTACCGGTGCAAGGTCGCCTCTATCTCAGCCTTCAGTTTCAGTCACTAGTTTATCAAATGGGTCTAATAGTCGGAATTCCTCGTTCATGAGACGCGGGGATACGCGTAGGAATAGGAGTCCGGTGCATTCGGGGTTGTGGATATCGATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCTATCGTTGTTTTATCTTTGTCAAGGCATGAACATCCTCATACTCCATTGTTTCAATGGATCATTGGTTATGCTTCCGGATGTGTTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATGCGAGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCCAGACCTAGTGGTGGAGAAGATGGTCAGGCTGTTGCATCCTCCAGAAGCAATCAAGCCTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTGCCATGTATAATTTCCATCCTCGGGGTTAGAGAGGACATGTCTCAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGAGAAGGCAACTCAACTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGAGTAATATCTGGAGAAGATGCAGTATGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGATTGTGTGGATAAATGGTTGAAGATAAATTCATTATGCCCTCTTTGCAAGAATGATGTTGGTGAGAACCTAACAGGATTGGTCTCAAGTGAAGATGCCAACCAACATCGGAATGAGAGCAGGATTGAGAATGGCCTTGCGAATACATCACTTTAG 1248 0.4255 MERPGSLNGSQHVIEIGGSSDASTSTATHHDSNFNGTHVTLHEERVTGARSPLSQPSVSVTSLSNGSNSRNSSFMRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPHTPLFQWIIGYASGCVATLPLLYWRYYHHNHAREQDSSQSRQTSPRINDPSGTLLFSSRPSGGEDGQAVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSTEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKNDVGENLTGLVSSEDANQHRNESRIENGLANTSL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00384 415 MobiDBLite consensus disorder prediction 50 74 - -
Vian7g00384 415 SUPERFAMILY RING/U-box 332 387 - -
Vian7g00384 415 FunFam E3 ubiquitin-protein ligase 323 389 - -
Vian7g00384 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Vian7g00384 415 SMART ringv_2 339 381 IPR011016 GO:0008270
Vian7g00384 415 MobiDBLite consensus disorder prediction 12 35 - -
Vian7g00384 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 384 - -
Vian7g00384 415 MobiDBLite consensus disorder prediction 1 85 - -
Vian7g00384 415 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Vian7g00384 415 Pfam Ring finger domain 340 381 IPR001841 -
Vian7g00384 415 MobiDBLite consensus disorder prediction 395 415 - -
Vian7g00384 415 SMART ring_2 340 380 IPR001841 -
Vian7g00384 415 CDD RING-H2_EL5-like 340 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00384 Vian-Chr7 10405067 10411782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00384 76 387 C3H Transcription Factor Family AT1G80400 59.748 1.90e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00384 - - gmx:100778728 730.709