Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00354 ATGTTCTCTAGCTCCCAATTCGATGCCACCGCCGGCTTCTCCGGCGGCGGATTCATGTCCTCTCAGCCGTCTAACTTCAACGATTCATCTCCCGCACCACCAAAAAGTCGCGAAACTCAGGGTTTGGTGCCGGTGACGGTGAAGCAGATTAGTGAAGCCTCTCAAACCGGTGACGAAAAATCGAATTTCGTGATCAACGGTGTAGATCTGAACAATGTAACACTAGTGGGGATGGCGTTTGAGAAAGTTGAGAGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACTGGACGAATAAAATGCCGAAGATGGGTTAATGAGACTTTTGACACGAAGGAAATGGAGGAAGTAATGCCCGTGACAAATTTTGAGGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTGCGCTCCAAACTGAAGTTGGAAGGAATCACTTCTACAAATCCTTCATCTGTCTCATCTTTGAACACTCCTGTCAAAAATGCCCCAAATGGATCTCAGCCGCCCACGTCAACTCCAGCATATGCACAGTATAGCGTGGATGGACTTAAGGATTGCGATAAATTGATTATTGACTACCTGCAGCAGCATTCAGATATGTCAGATGAACGGGGAATACATGTCAATGAACTATCCCGGGAGCTCAAGCTTCCAATGGACAGGATCATGTTGTCGCTGAAGACTCTTGGAGACGATGGTTTAGTATACTCTACCATTGATGACTACCATTACAAACAAGCTTGA 756 0.4524 MFSSSQFDATAGFSGGGFMSSQPSNFNDSSPAPPKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNVTLVGMAFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMPVTNFEEIPFHFIDCIHNHLRSKLKLEGITSTNPSSVSSLNTPVKNAPNGSQPPTSTPAYAQYSVDGLKDCDKLIIDYLQQHSDMSDERGIHVNELSRELKLPMDRIMLSLKTLGDDGLVYSTIDDYHYKQA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00354 251 PANTHER REPLICATION PROTEIN A-RELATED 6 249 IPR040260 -
Vian7g00354 251 SUPERFAMILY Nucleic acid-binding proteins 42 140 IPR012340 -
Vian7g00354 251 SUPERFAMILY "Winged helix" DNA-binding domain 185 249 IPR036390 -
Vian7g00354 251 Gene3D - 38 142 IPR012340 -
Vian7g00354 251 MobiDBLite consensus disorder prediction 150 178 - -
Vian7g00354 251 PIRSF RPA32 114 251 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian7g00354 251 PIRSF RPA32 1 119 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian7g00354 251 FunFam replication protein A 32 kDa subunit A-like 35 120 - -
Vian7g00354 251 Gene3D - 181 251 IPR036388 -
Vian7g00354 251 MobiDBLite consensus disorder prediction 13 42 - -
Vian7g00354 251 Pfam Replication protein A C terminal 155 245 IPR014892 -
Vian7g00354 251 FunFam Replication protein A 32 kDa subunit 182 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00354 Vian-Chr7 9856578 9860477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00354 1 251 Core DNA Replication Machinery Family AT2G24490 42.500 4.95e-74 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00354 K10739 - gmx:100802512 419.468