Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00344 ATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGACCCATGTATTTAGAGATACTGCTAATACTAGAGAGCGAACAGGGCAAGTTTGCAGCAAATTAGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTTTATTCCAGTCCTCTTCAACTAGCAAAGAAGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCGGCAAAACGAAATACGGAACCTAGGAAAATATTATCCTCTCAGTTTGAAGCAGATTCCCCTGAAAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAAGAAATTCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTAATGTGAGACTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATGTCAAAGGAATTTAAATCAAAGATCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGACACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATGTCATCCCATCTGGTTGTTCATCATCAGATTCAAGTCATAATAGAAAGAAGGATACAATAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATTATTGGATCTTCACTGGAAGGACGTAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACATTTTCTCACCGGAATACCAGTTTGACACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGTGAGTTCCCACATTCTGGTGATGTTAATCCTCATGGCATTTCATGTCAGATTTCTGTGGAGACTCCATTAACTTGCTCAAGCTCTTGTCATTCACCAGGCAATAGCAGTGAGGACTTACCTCTGTCTCCTCCGGCAGAAGATGACATCACTGATTCTCTAAATGGGGACAACTTTTGGCATTACAATATGTCCAGTATTGAAGGGGTTGTATTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGTGAGCAAATTCTTATGTTCGGGACAGACATCTACGAGAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCCCTGGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGACACACATGAGAATTGTAATGAAGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAGTTGGGGACCTGCCATGCAAGCATAGGTTTCATGTGGATTGTATACAGGAATGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCACCTCATTGA 1584 0.4242 MDEYSGRRGVDGVAVPRKGMTHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQVRSSEKGKSVRPLFQSSSTSKEEIGSSSRSTSNPAKRNTEPRKILSSQFEADSPESSSVQDEPESSELIPPSEEIQRGPKSRGGSSESSNVRLMEVGSSSSVSNTRCQRNLNQRSGLRGQEIKSTGPVTHAVSSRYGLRNIRCNTISDVIPSGCSSSDSSHNRKKDTIKKRDGEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTFSHRNTSLTPVRTQRSLSGHARGRLSSQGNENPLATSEFPHSGDVNPHGISCQISVETPLTCSSSCHSPGNSSEDLPLSPPAEDDITDSLNGDNFWHYNMSSIEGVVLALERIEQGGELTREQILMFGTDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTHENCNEDKDDIKCCICQEEYVIGDEVGDLPCKHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSPH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00344 527 SUPERFAMILY RING/U-box 467 517 - -
Vian7g00344 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 66 517 IPR045191 GO:0061630
Vian7g00344 527 MobiDBLite consensus disorder prediction 133 183 - -
Vian7g00344 527 MobiDBLite consensus disorder prediction 328 342 - -
Vian7g00344 527 MobiDBLite consensus disorder prediction 63 119 - -
Vian7g00344 527 FunFam E3 ubiquitin-protein ligase arkadia 435 519 - -
Vian7g00344 527 MobiDBLite consensus disorder prediction 213 232 - -
Vian7g00344 527 MobiDBLite consensus disorder prediction 201 313 - -
Vian7g00344 527 MobiDBLite consensus disorder prediction 233 306 - -
Vian7g00344 527 SMART ring_2 473 513 IPR001841 -
Vian7g00344 527 ProSiteProfiles Zinc finger RING-type profile. 473 514 IPR001841 -
Vian7g00344 527 Pfam Ring finger domain 472 514 IPR001841 -
Vian7g00344 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 518 IPR013083 -
Vian7g00344 527 MobiDBLite consensus disorder prediction 1 183 - -
Vian7g00344 527 MobiDBLite consensus disorder prediction 328 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00344 Vian-Chr7 9681242 9684042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00344 367 517 C3H Transcription Factor Family AT2G15530 47.712 1.25e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00344 - - vum:124824270 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00344 7 9681242 9684042 Vian7g00344 7 9681242 9684042 ECH