Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00284 ATGCAAGCTGAGGATGGAACTAGCAATGGTGATAAGTGGGCTGTGTTGGGTAGGAGGTCAGACTCTGAAGATAGAGATTACGGGGGTAGAAATCTAGGTAGAAACAATGTTGCTGGAGGTGAAGAAGATCGGGGCTTGAAGGATGAATCTTTAAAGGATGGGGTTGTGGTTGAAGGTGAAGAAGTTCGGGGTTTGAAGAAGGAATCTGTTGATAGTAGGGTGACGAGTAAAGGTGGGAATGGTATTGCTGAAGGTGAAGAAGTGCGGGTCTTGAAGCGTGAAGCTATAAATAATGGGGTGACGCACGAAGGAGGAAATGGTGTTACAAATAGGAAAGAAGTTTGGGGTTTGAAGAATGGAACTGTAAATACCGGGTTAACAGTTGTGGGGGTCAATGGTGTTGCTGAAGGTGAAGAAAAAGTTCAGGACTTGAGTAATGAAACTGTAAATAATGGAATGGTACTTGAGGGTGGAAATGGTGTTGCTGAAAGCGAAGAGGTTTTGGGCTCAAAGAAGGAAGTTATAAATAATGGAGTGGCAATTGCTGATGGGAATGTTGTTGCTTACAGTGGAGAAGATCTGGGCTCAAAGGATGAAGCTGTAAACAATGAGGTGGCAATTGCAGATGGGAGTGGTGTTACTCCAGTTGAACATGATCGCTTGAAGAATGAAACTGTAGATCATGTAGAAGTACTTACAAATGGATTTGGTGTTGTAGAAGGGAAGTCTGGTGCAGTTGAATGTTTTCGAACATATAAGAGGCGCAAGCATGTAAAATGTGCTTCAGAATTTAAAGTTCAGGAGAACAGCAGAAAGCATTTGGAATTGGAAACTCTTAAAATTGACAGTAATGGTCAAGAACGCTCTTTGGATTTAGATTGTTTGCTTTACAGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTGCATAATGGATTTTGTACTGAGCCTGATGGTCATGGTGCAACTGAAAGGTGTCAGCGATTGTTCTGCGATATCTTAGCCTCCGAAGAGTTCAGTTCATTATGTAAAGTACTGCTTGAAAATTTCCAAGAAATGAAACCTGAAACTATATTTGACTTTAGCCAGATAAACTCAAGGATGAAGGAACAAGCTTATGAGCAAACGCCTACACTTTTCTTATCTGATCTTCAAGAGGTTTGGCAGAAGCTTCAAAATACTGGCCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACTTGTCAAAAGCTTCCTTCTGTGAGCGGGTTGTGATTTCAACGCCCAGATCCTTCGAAGACGGAAAACAAGTGGAATCAATCTCTCACATGAAGCCGGAGCGGAGAGTAGAATGTGTTACATTAAAAGTTGGCAGTTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATTGAGCCTGCTGTAGAAGAAATACCCCCTAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGTGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCAAAGAAACTGGACGACATTGTCTGCAAGGAAATCATCCCTACAAAAGAGGAAAAACTGAATGAATTGGAGGAGAATTCAATCTGTACTTGTGATGGGATTCCAGTTTCCGCTGGGCCGAGACATCTATCTGTCTGCAAAATTTGTAAAATAGTGGTGCAGCGTGGAAAAATAAAAATCTGTGGTCACTTATTTTGCCCCAGTAAGTACTACCATGTAAGGTGTTTGTCTAGTAAGCAGCTTAGGACTTACGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTCTGCTTCACTGACAAAGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCATATGTACTGTTTGAAACCTCCGCTGAATTTGATTCCTGTGGGGAAATGGTTCTGCATAAAATGTGATGCAGGGATACTAGCAATACGCAAGGCAAGAAAGGCATACGAGAGCAAGAAAGGGAAAATTGGACAGAAGGATTTAAAGCCAAATGAAGACATTGACAAGAAATGGAACAGAAAACGTGAACGGGAATCTGATAAAGTTGGAGGAATGGAGATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGAAAATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAAAATAA 2208 0.4162 MQAEDGTSNGDKWAVLGRRSDSEDRDYGGRNLGRNNVAGGEEDRGLKDESLKDGVVVEGEEVRGLKKESVDSRVTSKGGNGIAEGEEVRVLKREAINNGVTHEGGNGVTNRKEVWGLKNGTVNTGLTVVGVNGVAEGEEKVQDLSNETVNNGMVLEGGNGVAESEEVLGSKKEVINNGVAIADGNVVAYSGEDLGSKDEAVNNEVAIADGSGVTPVEHDRLKNETVDHVEVLTNGFGVVEGKSGAVECFRTYKRRKHVKCASEFKVQENSRKHLELETLKIDSNGQERSLDLDCLLYRLQSEANGQENAVHNGFCTEPDGHGATERCQRLFCDILASEEFSSLCKVLLENFQEMKPETIFDFSQINSRMKEQAYEQTPTLFLSDLQEVWQKLQNTGHQIVAIARSLSNLSKASFCERVVISTPRSFEDGKQVESISHMKPERRVECVTLKVGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIEPAVEEIPPKSWFCANCTASGIGCQHENCVVCERLNVPKKLDDIVCKEIIPTKEEKLNELEENSICTCDGIPVSAGPRHLSVCKICKIVVQRGKIKICGHLFCPSKYYHVRCLSSKQLRTYGHCWYCPSCICQVCFTDKDDDKIVLCDGCDHAYHMYCLKPPLNLIPVGKWFCIKCDAGILAIRKARKAYESKKGKIGQKDLKPNEDIDKKWNRKRERESDKVGGMEMLITAANTLNSEEKMNAIQIESERTLK 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00284 735 MobiDBLite consensus disorder prediction 678 705 - -
Vian7g00284 735 MobiDBLite consensus disorder prediction 1 52 - -
Vian7g00284 735 PANTHER OS02G0192300 PROTEIN 439 544 - -
Vian7g00284 735 CDD PHD_RSF1 613 657 - -
Vian7g00284 735 Gene3D - 341 502 - -
Vian7g00284 735 SMART PHD_3 563 612 IPR001965 -
Vian7g00284 735 SMART PHD_3 453 499 IPR001965 -
Vian7g00284 735 SMART PHD_3 615 658 IPR001965 -
Vian7g00284 735 ProSiteProfiles Zinc finger PHD-type profile. 610 660 IPR019787 -
Vian7g00284 735 ProSiteProfiles Zinc finger PHD-type profile. 451 501 IPR019787 -
Vian7g00284 735 SUPERFAMILY FYVE/PHD zinc finger 612 660 IPR011011 -
Vian7g00284 735 SUPERFAMILY FYVE/PHD zinc finger 431 499 IPR011011 -
Vian7g00284 735 Pfam PHD-finger 612 658 IPR019787 -
Vian7g00284 735 Pfam PHD-finger 454 500 IPR019787 -
Vian7g00284 735 MobiDBLite consensus disorder prediction 16 30 - -
Vian7g00284 735 ProSitePatterns Zinc finger PHD-type signature. 454 498 IPR019786 -
Vian7g00284 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 661 IPR013083 -
Vian7g00284 735 FunFam PHD finger protein EHD3 isoform A 345 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00284 Vian-Chr7 8316021 8336432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00284 612 675 C2H2 Transcription Factor Family AT3G01460 53.125 1.46e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian7g00284 PHD 1.7e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00284 - - vun:114195482 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00284 7 8316021 8336432 Vian7g00284 7 8316021 8336432 ECH
Vian7g00284 7 8316021 8336432 Vian4g01480 4 29722884 29733183 PCT