Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00280 ATGACTGAAGGTTTCAAAGAGAAGTTAGGTAAAGGAGGATTTGGTGACGTGTTTAAGGCAAAGTTGCGGAGTGGACCTTCCGTGGCAATCAAAATGTTAAACAAATCTAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAGCGCGCTCTTGTATATGAATTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAAGAGATGAAAATACAGATTTTAGTTATGAGAAAATATACAAGATATCGATTGGAGTAGCTCGTGGAATTGCCTATCTCCATCATGGGTGTGAGATGCAGATTTTGCACTTTGATATCAAACCCCATAACATCTTATTGGATGAAAACTTCATCCCAAAGGTTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGTGTTGTCACGATGACGGCAGGAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCCACAAAGCTGATGTTTATAGCTTCGGAATGTTGTTGATGGAGATGGCAAGTAAGAGGAAGAATCTAAATCCCTATGCAGAACACTCAAGCCAACTTTACTTTCCCCTTTGGATTTATAATCATATTAGAGAAGAGGAAGATATAAATATAAAGGATTTGAGCGAAGAGGAAAAGCTAATAGTAAAAAAAATGATCATAGTTGCACTTTGGTGTATACAGTTAAAACCAACGGATCGTCCTTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAGATTTGGAAATACCTCCAAAACCTATTTTATTTCCTGATGAGAAATGA 882 0.3549 MTEGFKEKLGKGGFGDVFKAKLRSGPSVAIKMLNKSKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSRDENTDFSYEKIYKISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSVVTMTAGRGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMASKRKNLNPYAEHSSQLYFPLWIYNHIREEEDINIKDLSEEEKLIVKKMIIVALWCIQLKPTDRPSMNKVVEMLEGDIEDLEIPPKPILFPDEK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00280 293 PIRSF ILK 4 281 - -
Vian7g00280 293 Pfam Protein tyrosine and serine/threonine kinase 5 273 IPR001245 GO:0004672|GO:0006468
Vian7g00280 293 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
Vian7g00280 293 ProSiteProfiles Protein kinase domain profile. 3 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00280 293 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 286 IPR045874 GO:0004672
Vian7g00280 293 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Vian7g00280 293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vian7g00280 293 FunFam PR5-like receptor kinase 78 285 - -
Vian7g00280 293 Gene3D Transferase(Phosphotransferase) domain 1 82 281 - -
Vian7g00280 293 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00280 293 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00280 Vian-Chr7 8243064 8243945 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00280 1 288 Receptor kinase-like Gene Family AT4G18250 52.525 6.43e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian7g00280 PK_Tyr_Ser-Thr 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00280 - - vum:124829708 540.421