Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00277 ATGAAAATGCTGCCAACTTCCACCGCCGGAGAGGCCAGCCAAGGTGGCCGGACGGTGGTCGTTGGAGTGAAGATGGACTCCCACAGCACCGAGTTGCTCACTTGGGCTTTGTTCAAAGTGGCTCAGCCCTGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTTAATCGGGATGGGAAATCGTCTTTATTTTCACTTGTCAAAGCGTTTGACTCTGTGCTTGCCGTTTACGAAGGGTTCTGCAATTTGAAACAGGTTGTGTTTCTCAGCATCTCTCTCCAACTCTTTCCCAGTCATGTTCTCGGAGTTTTAAATTGTGTCGGTGGTTTTGTCACTGTTTTTGATGGTGATCGCAATGGCTCCAGAAACCTTGTGGATCTTAAGTTCAAAATATGTCGGGGTTCATCAGTGAGGAGAATTCTGGTTCGAGAAGCAAATGCTTATTCTGCAACGCACATCATAGTTGGAAGTCCTCAAGGTCTTCACAGAATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGCTACCAAGGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAATTGTGTTCAAGAGGGATGGATCACCAGCAACTGCAGCTGACATGAAAGGAGTTGATCAGAACCACGCAACTGGGGCGCTTAGTTCGATTCACAGGACACTTGGCAATACTTCAAAAGTGCTAGATGATGATGGGTCCGGGATGCAGGGAAAGGGTAGTGGTCAATTTTCAGATCACAGTTTGGCTAAGGCTTTCCTGGAATCTAAAGAATTCATTGAGAAGAAGAGTTGCTCTGTTTGTTCTTCAAACCCAGCACTGTTTGGTTTATATTGTAACCATTCAGAAGAAGAGTCATGTGGTGATGCTTGTGATGAGAACCCTTTGGCAATAGTGTCTGTGCAGACCAATGATTCTAATTCTAAACCAGGTTGGCCTTTGCTTCATAGGACAATTGTATCTGACAGGAAATGTTCTGAAAGATCGATGTTTCGCCAGATCTCTGTGGTACAATGGGCAATGCAGTTACCTTCTAGAAATCTTTCATATGCTGCACATCTTGACCAAAAAGCAAACAATTGTGGCCAAAATAAGGATCAGTTTTTGGGTCTAGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAATTAGGGACTGCCTCTGTGCCTGAACACAATCCTAGAAGCATTCCTAAGGAATTGGAGGGCCTTCATGAGAGATACTCATCCAGTTGCAGATTGTTTAAGTACCAAGAACTTGTATTTGCAACATCAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGCCAGGTATACAGAGGCTGCCTTCCTGATGGCAAGGAACTAGCTGTTAAGATCTTAAAGCCATCTGATGATGTTCTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATAATTTCCCTCCTTGGATTCTGCTTTGAGGATGGTAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATCCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCCATGGGTGTTGCTGAGGCTTTGGAGTATCTACATAATAATGAAGGCCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTTTTGTTATCTGAGGATTTTGAACCACAGCTCTCTGACTTTGGACTTGCAAAATGGGCATCAACTTCATCATCACATATAATCTGCACAGACGTTGCTGGAACCTTTGGTTACATGGCTCCTGAGTACTTCATGTATGGCAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTCCTCTCAGGGAGAAAGCCCATAAGTAGTGATTATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAATCCAATTCTAAATAGTGGGAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCCTGAAGAGATGGAAAGGATGGTCTTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGAGCTAGACCTCAAATGAGCCTTATCAAAAAGCTCCTTGGAGGTGATGGTGAAGTGATGAAGTGGGCAAGACTAGAAGTGAATGCTGTGGAAGCAGCAGAAATGGCTGATGATGAAGCTTGTCTTCCTTCTTCCAATCTGCAGTCACACCTTAACCTTGCTCTGCGTGATGTGGAGGATGACTCACTCTCCATCTGCAGTGTTGAGCAAAACATCTCATTGGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCAAGCTTTGATTGA 2349 0.4342 MKMLPTSTAGEASQGGRTVVVGVKMDSHSTELLTWALFKVAQPCDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVVFLSISLQLFPSHVLGVLNCVGGFVTVFDGDRNGSRNLVDLKFKICRGSSVRRILVREANAYSATHIIVGSPQGLHRIRPCISVARYCAKKLPRDCWVLAVNNGKIVFKRDGSPATAADMKGVDQNHATGALSSIHRTLGNTSKVLDDDGSGMQGKGSGQFSDHSLAKAFLESKEFIEKKSCSVCSSNPALFGLYCNHSEEESCGDACDENPLAIVSVQTNDSNSKPGWPLLHRTIVSDRKCSERSMFRQISVVQWAMQLPSRNLSYAAHLDQKANNCGQNKDQFLGLDSKSGALVPVDAELGTASVPEHNPRSIPKELEGLHERYSSSCRLFKYQELVFATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENIHGNKKNPLVFGWTERYKVAMGVAEALEYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWANPILNSGKVLQLLDPSLGDNYDPEEMERMVLAATLCIRRAPRARPQMSLIKKLLGGDGEVMKWARLEVNAVEAAEMADDEACLPSSNLQSHLNLALRDVEDDSLSICSVEQNISLEDYLRGRWSRSSSFD 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00277 782 SMART serkin_6 435 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00277 782 Gene3D Phosphorylase Kinase; domain 1 403 509 - -
Vian7g00277 782 Gene3D Transferase(Phosphotransferase) domain 1 510 715 - -
Vian7g00277 782 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 404 509 - -
Vian7g00277 782 PANTHER OS08G0249100 PROTEIN 292 717 IPR046958 -
Vian7g00277 782 ProSiteProfiles Protein kinase domain profile. 435 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00277 782 Pfam Protein kinase domain 439 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00277 782 ProSitePatterns Protein kinases ATP-binding region signature. 441 463 IPR017441 GO:0005524
Vian7g00277 782 CDD STKc_IRAK 441 700 - -
Vian7g00277 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672|GO:0006468
Vian7g00277 782 SUPERFAMILY Protein kinase-like (PK-like) 415 706 IPR011009 -
Vian7g00277 782 FunFam Putative receptor-like serine/threonine-protein kinase 510 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00277 Vian-Chr7 8183530 8186979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00277 422 705 Trihelix Transcription Factor Family AT1G68690 46.021 1.01e-76 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian7g00277 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00277 - - gmx:100305405 1065.45