Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00275 ATGGGGAGGGGAAAGATTGAGATCAAGAGGATCGAGAACTCGAGCAACAGACAAGTTACCTACTCCAAGAGAAAGAATGGGATCCTAAAAAAGGCCAAGGAAATCACTGTTCTATGTGATGCACAAGTTTCCCTTATCATCTTTGCTGCATCTGGGAAGATGCATGACTACATCAGCCCTTCCACCACGCACTTGAAGGGGGAAGATATAAACTCTCTGAACTACAAGGAACTCATGGCCTTAGAAGATGCCTTAGAAACTGGTCTCGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGAGCAAGAGAAGTGGAGAACGGGTTTGATCAGAGTGTGAGGGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCAATGCAGCCAAATCTTCAAGAAAGGATCTGA 447 0.4541 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTHLKGEDINSLNYKELMALEDALETGLDKILEEENRELNFLWQQRLAVEGAREVENGFDQSVRDYNSHMPFAFRVQPMQPNLQERI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00275 148 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian7g00275 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian7g00275 148 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Vian7g00275 148 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian7g00275 148 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian7g00275 148 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian7g00275 148 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian7g00275 148 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 141 - -
Vian7g00275 148 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Vian7g00275 148 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vian7g00275 148 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00275 Vian-Chr7 8094226 8098162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00275 1 96 MADS-box Gene Family AT5G20240 48.921 3.59e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian7g00275 K-box 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00275 K09264 - gmx:100499997 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00275 7 8094226 8098162 Vian7g00275 7 8094226 8098162 ECH
Vian7g00275 7 8094226 8098162 Vian4g01488 4 29875106 29876478 PCT