Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00273 ATGGGTTTTGTGAAAGATGTGGTGACAGGTAGTGCTCTAGTAGATATGTACTCAAAATTTAAGAAATTGGATGATGCTTTTAAGGTTTTCCGTGAAATGCCAGTAAGAAATTTGGTATGTTGGAATGCTGTAATTGCGGACCATGTTCAGAACGAGCGGTTTATTGAGGGACTAAAACTGTTTAAGGATTTGCTGAAAGTAGGTATGGGGGTGAGTCAATCAACCTATGCTAGTGTATTCAGATCATGTGCGGGATTATCTGCATTGAAATTGGGTACACAGATGCATGGTCACGCTCTAAAGACTGATTTTGGATATGACTGTATAGTTGGAACTGCCACATTGGACATGTACGCAAAATGTGGCAGAATGTCTGATGCTTGGAAGAGGACTTACGTAGGATTTGACGACATTAGTTTGTCTGGTGCTTTGACTGCTTCAATGGAACCTGATGATTTTACTTACGGTAGTGTTGTAAAGGCATGTGTTGGTCAGCAAGCTTTAAACAATGGTATGGAGATGCATGGAAGAATTATTAAGTCTGGTATGGGGTTAGACTGTTTTGTTGGCAGTGCTCTTGTTGATATGTATAGCAAGTGTGGAATGCTAACGGAGGCTGGACAACTGTTTCTTGGAATTCGATCATCTCAGGATTCTCATCACAAAAGCAAAGAAACATTTCAAATGATGCTTACAGTGGCTTACGGGGCCCTCTTAAAGAGCATAAAGAGTTTGGTGGGTTTATCCGGCAATCTGACCACCTCAAACATATATTCATTCATGCAACCATCGAATGAGTACGAGACTGGTGGGATAACACGGTACAACACTTGCACACTCCAAGCCAACCAAACTTTTATTGTTTTGAGATTTATGGAGTTGTGGGATGTCGCTGAGGAATACGAAAGCAACACAATGCCCGCCTACAGAAATGTAAGGAGGAACTATAACAGGCAAAGGTTTGCACAACGAGTTCACAGCATAGACAATGAGCTTGAGGACTCATCACAGATGCGAGCGGTTGTGCAAACTGCCCTCGTTCTATGCTCTTCTGTGTATGTAATGATAAGTTTCTTTGGTTTCCTCCTATTTGGAGAAGGAACTCTTGATGATGTGTTGGCCAATTTCGATACCAATCTTGGAATCCCTTTTGGTTCTGTGCTCAACGATGATGTTCGATTAAGCTACGCAGCACACCTGATGCTTGTATTCCCAGTTGTTTTCTATCCATTGGGGCTCAATATGATGGTCTCCTCTTTCCTTCATAAAACCTCTGGTTCTTGA 1284 0.4182 MGFVKDVVTGSALVDMYSKFKKLDDAFKVFREMPVRNLVCWNAVIADHVQNERFIEGLKLFKDLLKVGMGVSQSTYASVFRSCAGLSALKLGTQMHGHALKTDFGYDCIVGTATLDMYAKCGRMSDAWKRTYVGFDDISLSGALTASMEPDDFTYGSVVKACVGQQALNNGMEMHGRIIKSGMGLDCFVGSALVDMYSKCGMLTEAGQLFLGIRSSQDSHHKSKETFQMMLTVAYGALLKSIKSLVGLSGNLTTSNIYSFMQPSNEYETGGITRYNTCTLQANQTFIVLRFMELWDVAEEYESNTMPAYRNVRRNYNRQRFAQRVHSIDNELEDSSQMRAVVQTALVLCSSVYVMISFFGFLLFGEGTLDDVLANFDTNLGIPFGSVLNDDVRLSYAAHLMLVFPVVFYPLGLNMMVSSFLHKTSGS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00273 427 Gene3D Tetratricopeptide repeat domain 1 88 IPR011990 GO:0005515
Vian7g00273 427 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 6 40 IPR002885 -
Vian7g00273 427 Pfam Transmembrane amino acid transporter protein 326 411 IPR013057 -
Vian7g00273 427 Pfam PPR repeat 39 68 IPR002885 -
Vian7g00273 427 Pfam PPR repeat 11 37 IPR002885 -
Vian7g00273 427 Pfam PPR repeat 191 212 IPR002885 -
Vian7g00273 427 Gene3D Tetratricopeptide repeat domain 89 245 IPR011990 GO:0005515
Vian7g00273 427 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 145 215 IPR046960 GO:0003723|GO:0009451
Vian7g00273 427 NCBIfam pentatricopeptide repeat 12 39 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00273 Vian-Chr7 8030987 8037037 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00273 325 415 Amino Acid or Auxin Permease AAAP Family AT5G38820 78.022 4.09e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00273 - - pvu:PHAVU_008G023900g 283.108